RNA id: TU220583


Basic Information

Item Value
RNA id TU220583
length 245
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G162848
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 36179840 ~ 36181301 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CAGCTGAACCGTATCATAACTCAGCAGGTACAGTATCTTATATATTACAGAGAAGAGCAGTGGGTAGGAGTAACCGCGGATACCCTCTTTCCACTCCCAGGTTTCGTAGCCATACTTGAAGACCATACGATGGGAGACTTCAAGTGACTGCCAGAATTCATCTGGGACGAAACTGGTCTGGACCAGGAGGCAGTTAACAAGGCGAAagatcactgagatcactgttaCACTGAGCCCGAAGAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU220565 lncRNA upstream 10113 36132415 ~ 36169727 (+) False ccpg1
TU220552 lncRNA upstream 55977 36121722 ~ 36123863 (+) True G162829
TU220553 lncRNA upstream 59438 36119381 ~ 36120402 (+) False pygo1
TU220449 lncRNA upstream 351015 35828020 ~ 35828825 (+) False G162746
TU220585 lncRNA downstream 1459 36182760 ~ 36183548 (+) True G162850
XR_454969.3 lncRNA downstream 2418 36183719 ~ 36185659 (+) True LOC103046468
TU220576 lncRNA downstream 2474 36183775 ~ 36185631 (+) False LOC103046468
TU220579 lncRNA downstream 2474 36183775 ~ 36185631 (+) False LOC103046468
TU220577 lncRNA downstream 2527 36183828 ~ 36185631 (+) False LOC103046468
XM_022679908.1 mRNA upstream 10095 36149295 ~ 36169745 (+) True ccpg1
XM_022679906.1 mRNA upstream 10095 36149295 ~ 36169745 (+) False ccpg1
XM_022679907.1 mRNA upstream 10095 36149296 ~ 36169745 (+) False ccpg1
XM_007251867.3 mRNA upstream 31738 36142088 ~ 36148102 (+) True LOC103046170
XM_022679905.1 mRNA upstream 43100 36127139 ~ 36136740 (+) False dnaaf4
XM_007251869.3 mRNA downstream 7467 36188768 ~ 36223035 (+) True rab27a
XM_022679413.1 mRNA downstream 209874 36391175 ~ 36439808 (+) True LOC111194719
XM_022679911.1 mRNA downstream 789409 36970710 ~ 37261985 (+) False LOC103026877
XM_022679909.1 mRNA downstream 789410 36970711 ~ 37261985 (+) True LOC103026877
XM_022679912.1 mRNA downstream 789410 36970711 ~ 37261985 (+) False LOC103026877
TU219593 other upstream 3460565 32714183 ~ 32719275 (+) True G162096
TU219521 other upstream 3884811 32236316 ~ 32295029 (+) True G162032
TU219503 other upstream 4031650 32068862 ~ 32148190 (+) True G162017
TU219178 other upstream 5301528 30875118 ~ 30878312 (+) False hmgn2
TU220729 other downstream 572884 36754185 ~ 36754687 (+) True G162964
TU220936 other downstream 1228691 37409992 ~ 37411969 (+) True G163105

Expression Profile