RNA id: TU220706


Basic Information

Item Value
RNA id TU220706
length 390
lncRNA type inter_gene
GC content 0.27
exon number 2
gene id G162942
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 36670373 ~ 36671942 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aaacttaatattaacttaacttaatattGTAAGATGAACATGAGCAAGACAGCAGGTTGAGCagctgaacattaaatatttaaaagcagttaaaaaaaagtcttagaccatttcaaatgaactccatttattttttttaacaaacagtctgtaattatagaaatacatgtgttttatgctcatctgcaaaaactctgtaaaacagtgtagaaacaaaaataatattttatccctttgtCTCCCTAACCTGCAGgccaattactgaaaaaaaaagcatttttacagtCAGTTGAAATAAGTAGATCAGAAAGGTGTTTGTacataactttttatatttattgcacatcagaatagagcagaataaaatcctttaaaaaaacattttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU220694 lncRNA upstream 107470 36562589 ~ 36562903 (+) True G162930
TU220691 lncRNA upstream 125620 36544470 ~ 36544753 (+) True G162927
TU220681 lncRNA upstream 182390 36487768 ~ 36487983 (+) True G162917
TU220668 lncRNA upstream 281981 36388021 ~ 36388392 (+) True G162904
TU220657 lncRNA upstream 397011 36273124 ~ 36273362 (+) True G162893
TU220707 lncRNA downstream 8587 36680529 ~ 36680776 (+) True G162943
TU220708 lncRNA downstream 20519 36692461 ~ 36692696 (+) True G162944
TU220710 lncRNA downstream 22662 36694604 ~ 36694927 (+) True G162946
TU220731 lncRNA downstream 92364 36764306 ~ 36764572 (+) True G162966
TU220738 lncRNA downstream 103894 36775836 ~ 36776134 (+) True G162973
XM_022679413.1 mRNA upstream 230565 36391175 ~ 36439808 (+) True LOC111194719
XM_007251869.3 mRNA upstream 447338 36188768 ~ 36223035 (+) True rab27a
XM_022679908.1 mRNA upstream 500628 36149295 ~ 36169745 (+) True ccpg1
XM_022679911.1 mRNA downstream 298768 36970710 ~ 37261985 (+) False LOC103026877
XM_022679909.1 mRNA downstream 298769 36970711 ~ 37261985 (+) True LOC103026877
XM_022679912.1 mRNA downstream 298769 36970711 ~ 37261985 (+) False LOC103026877
XM_022679913.1 mRNA downstream 615225 37287167 ~ 37352779 (+) True LOC103046025
XM_007239647.3 mRNA downstream 715552 37387494 ~ 37399839 (+) True LOC103045417
TU219593 other upstream 3951098 32714183 ~ 32719275 (+) True G162096
TU219521 other upstream 4375344 32236316 ~ 32295029 (+) True G162032
TU219503 other upstream 4522183 32068862 ~ 32148190 (+) True G162017
TU219178 other upstream 5792061 30875118 ~ 30878312 (+) False hmgn2
TU220729 other downstream 82243 36754185 ~ 36754687 (+) True G162964
TU220936 other downstream 738050 37409992 ~ 37411969 (+) True G163105

Expression Profile