RNA id: TU220738


Basic Information

Item Value
RNA id TU220738
length 299
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G162973
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 36775836 ~ 36776134 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTGTCAGATCCAgggttttaattgattttaattattacaaatgtaTGTCGGATCTTATAACTTTTACGGCAGTGTGGTGTTGTGGTGAGGCTGTGTGCTCAGTTTTAGATGATGAGCTCTGCTTTGCACCTCAGTTTTAAACTGCGAGGAATAATTTacggttatttatttatatatttatttatttatttatttacccatATGCTGTTGTGAtcctctgtttttaaaatgattattttaacgGCCGAGATGGCCTAAAACTGACTTTTAAGATTTTATAACACAATTTGGTTATAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU220731 lncRNA upstream 11264 36764306 ~ 36764572 (+) True G162966
TU220710 lncRNA upstream 80909 36694604 ~ 36694927 (+) True G162946
TU220708 lncRNA upstream 83140 36692461 ~ 36692696 (+) True G162944
TU220707 lncRNA upstream 95060 36680529 ~ 36680776 (+) True G162943
TU220706 lncRNA upstream 103894 36670373 ~ 36671942 (+) True G162942
TU220742 lncRNA downstream 57240 36833374 ~ 36833797 (+) True G162977
TU220770 lncRNA downstream 97539 36873673 ~ 36874376 (+) True G163004
TU220775 lncRNA downstream 123558 36899692 ~ 36899942 (+) True G163009
TU220778 lncRNA downstream 128515 36904649 ~ 36904848 (+) True G163012
TU220786 lncRNA downstream 140156 36916290 ~ 36916502 (+) True G163020
XM_022679413.1 mRNA upstream 336028 36391175 ~ 36439808 (+) True LOC111194719
XM_007251869.3 mRNA upstream 552801 36188768 ~ 36223035 (+) True rab27a
XM_022679908.1 mRNA upstream 606091 36149295 ~ 36169745 (+) True ccpg1
XM_022679911.1 mRNA downstream 194576 36970710 ~ 37261985 (+) False LOC103026877
XM_022679909.1 mRNA downstream 194577 36970711 ~ 37261985 (+) True LOC103026877
XM_022679912.1 mRNA downstream 194577 36970711 ~ 37261985 (+) False LOC103026877
XM_022679913.1 mRNA downstream 511033 37287167 ~ 37352779 (+) True LOC103046025
XM_007239647.3 mRNA downstream 611360 37387494 ~ 37399839 (+) True LOC103045417
TU220729 other upstream 21149 36754185 ~ 36754687 (+) True G162964
TU219593 other upstream 4056561 32714183 ~ 32719275 (+) True G162096
TU219521 other upstream 4480807 32236316 ~ 32295029 (+) True G162032
TU219503 other upstream 4627646 32068862 ~ 32148190 (+) True G162017
TU219179 other upstream 5897524 30875118 ~ 30878312 (+) False hmgn2
TU220936 other downstream 633858 37409992 ~ 37411969 (+) True G163105

Expression Profile