RNA id: TU220742


Basic Information

Item Value
RNA id TU220742
length 424
lncRNA type inter_gene
GC content 0.58
exon number 1
gene id G162977
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 36833374 ~ 36833797 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttctccccaatttacacggccaattacccaacccactcattaggactccccctatcactagtgatgccccagcacaccaggagggtgaagactaacacatgcttcctccgatacatgtgaagccagccaccgcttcttttcgagctgctgctgatgcagcattgcctgagcagccagcgcgcttggaggaaagcacagcggctcagctccgatacatcagctcacagacgccctgtgctgcagacatcaccataggagtgatgtagggagagagcgccatctacccacccagagggagcagggccaattgtgctccctctgacgccggcagcttgatggcaaagctgcatgagcgggggttcgaacctgcgacctcctgctcatagtggcagcgctttagaccgctggaccactcggcgcccaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU220738 lncRNA upstream 57240 36775836 ~ 36776134 (+) True G162973
TU220731 lncRNA upstream 68802 36764306 ~ 36764572 (+) True G162966
TU220710 lncRNA upstream 138447 36694604 ~ 36694927 (+) True G162946
TU220708 lncRNA upstream 140678 36692461 ~ 36692696 (+) True G162944
TU220707 lncRNA upstream 152598 36680529 ~ 36680776 (+) True G162943
TU220770 lncRNA downstream 39876 36873673 ~ 36874376 (+) True G163004
TU220775 lncRNA downstream 65895 36899692 ~ 36899942 (+) True G163009
TU220778 lncRNA downstream 70852 36904649 ~ 36904848 (+) True G163012
TU220786 lncRNA downstream 82493 36916290 ~ 36916502 (+) True G163020
TU220788 lncRNA downstream 92728 36926525 ~ 36926814 (+) True G163022
XM_022679413.1 mRNA upstream 393566 36391175 ~ 36439808 (+) True LOC111194719
XM_007251869.3 mRNA upstream 610339 36188768 ~ 36223035 (+) True rab27a
XM_022679908.1 mRNA upstream 663629 36149295 ~ 36169745 (+) True ccpg1
XM_022679911.1 mRNA downstream 136913 36970710 ~ 37261985 (+) False LOC103026877
XM_022679909.1 mRNA downstream 136914 36970711 ~ 37261985 (+) True LOC103026877
XM_022679912.1 mRNA downstream 136914 36970711 ~ 37261985 (+) False LOC103026877
XM_022679913.1 mRNA downstream 453370 37287167 ~ 37352779 (+) True LOC103046025
XM_007239647.3 mRNA downstream 553697 37387494 ~ 37399839 (+) True LOC103045417
TU220729 other upstream 78687 36754185 ~ 36754687 (+) True G162964
TU219593 other upstream 4114099 32714183 ~ 32719275 (+) True G162096
TU219521 other upstream 4538345 32236316 ~ 32295029 (+) True G162032
TU219503 other upstream 4685184 32068862 ~ 32148190 (+) True G162017
TU219179 other upstream 5955062 30875118 ~ 30878312 (+) False hmgn2
TU220936 other downstream 576195 37409992 ~ 37411969 (+) True G163105

Expression Profile