RNA id: TU220770



Basic Information


Item Value
RNA id TU220770
length 704
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G163004
representative True

Chromosome Information


Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 36873673 ~ 36874376 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


tccCTTGggtgtcctgatgagagccagtttcatcatgacgtttttttttatggtcttttgatgcaactgcacttaaggatactttcaaagatcTTCATTTTCCTTACTTAGTTGAGGAGTtttttgccataatctggattagaacattactcaaatagagctattcactgtatacctgtaactctacctcttcactactttacaactgatgctctcaaacacattaagaggcaagaaataaaaaatatttaactcttgacgagttcaacacagctgttaactgaaagcctgaatttcaggtgcctgagaaaatccaaccaagatgtgcaaaactgtcatctaaacaagatgtgctactttgaaaaatctaaaatataaaacatacactTTTTTGTGCACTTAATAATTCTGTGTGAATTTAacgtttgtccaaactttttactggtTTGGTACGTTTTTCAGGGCttattaatgtgttatgaaGCCCCTATGTAGGTAGCCttggactacgatacccagaattTACCACAGACTAACCTCACTCCCTCACATGATCACACGTCACTGTacacagcacctccaggaagtcaatcaccagaatattgaattCACCTGTCCACAcccatatacaggggttggacaatgaaactgaaacacctgtcattttagtgtgggaggtgtcatggctaaattggagcagcctg

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU220742 lncRNA upstream 39876 36833374 ~ 36833797 (+) True G162977
TU220738 lncRNA upstream 97539 36775836 ~ 36776134 (+) True G162973
TU220731 lncRNA upstream 109101 36764306 ~ 36764572 (+) True G162966
TU220710 lncRNA upstream 178746 36694604 ~ 36694927 (+) True G162946
TU220708 lncRNA upstream 180977 36692461 ~ 36692696 (+) True G162944
TU220775 lncRNA downstream 25316 36899692 ~ 36899942 (+) True G163009
TU220778 lncRNA downstream 30273 36904649 ~ 36904848 (+) True G163012
TU220786 lncRNA downstream 41914 36916290 ~ 36916502 (+) True G163020
TU220788 lncRNA downstream 52149 36926525 ~ 36926814 (+) True G163022
TU220817 lncRNA downstream 70061 36944437 ~ 36948087 (+) False G163028
XM_022679413.1 mRNA upstream 433865 36391175 ~ 36439808 (+) True LOC111194719
XM_007251869.3 mRNA upstream 650638 36188768 ~ 36223035 (+) True rab27a
XM_022679908.1 mRNA upstream 703928 36149295 ~ 36169745 (+) True ccpg1
XM_022679911.1 mRNA downstream 96334 36970710 ~ 37261985 (+) False LOC103026877
XM_022679909.1 mRNA downstream 96335 36970711 ~ 37261985 (+) True LOC103026877
XM_022679912.1 mRNA downstream 96335 36970711 ~ 37261985 (+) False LOC103026877
XM_022679913.1 mRNA downstream 412791 37287167 ~ 37352779 (+) True LOC103046025
XM_007239647.3 mRNA downstream 513118 37387494 ~ 37399839 (+) True LOC103045417
TU220729 other upstream 118986 36754185 ~ 36754687 (+) True G162964
TU219593 other upstream 4154398 32714183 ~ 32719275 (+) True G162096
TU219521 other upstream 4578644 32236316 ~ 32295029 (+) True G162032
TU219503 other upstream 4725483 32068862 ~ 32148190 (+) True G162017
TU219179 other upstream 5995361 30875118 ~ 30878312 (+) False hmgn2
TU220936 other downstream 535616 37409992 ~ 37411969 (+) True G163105

Expression Profile


TU220770 Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 6.
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TU220770 Expression in each Bioproject

Bar chart with 7 bars.
TU220770 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 50.
End of interactive chart.