RNA id: TU220788


Basic Information

Item Value
RNA id TU220788
length 290
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G163022
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 36926525 ~ 36926814 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAGGATGacctgagagagcgagagggtgTATAGGGAGAAAGAAGATCAGACAGGTAAGAAGGGGTGAGGTTATTCAGGGCTTTATAGGTGAGCAGAagaattttgaactgaatgCGATATTGCACAGGAAGCCAATGGAGACGCTGGAGGACAGGGGTGATGTGGTGATGtgcacgagtgtgtgtgagaagacGGGCGGCAGAGTTCTGAACCATTTGAAGTTTGTGAATGGAGGAAGAGTTGACACCTAAAAGGAGAGAGTTACAGTAGTCTAGACGGCTGGAAATGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU220786 lncRNA upstream 10023 36916290 ~ 36916502 (+) True G163020
TU220778 lncRNA upstream 21677 36904649 ~ 36904848 (+) True G163012
TU220775 lncRNA upstream 26583 36899692 ~ 36899942 (+) True G163009
TU220770 lncRNA upstream 52149 36873673 ~ 36874376 (+) True G163004
TU220742 lncRNA upstream 92728 36833374 ~ 36833797 (+) True G162977
TU220817 lncRNA downstream 17623 36944437 ~ 36948087 (+) False G163028
TU220818 lncRNA downstream 21037 36947851 ~ 36951955 (+) True G163028
TU220808 lncRNA downstream 23608 36950422 ~ 36951955 (+) False G163028
TU220799 lncRNA downstream 24251 36951065 ~ 36952651 (+) False G163028
TU220846 lncRNA downstream 26872 36953686 ~ 36954992 (+) True G163030
XM_022679413.1 mRNA upstream 486717 36391175 ~ 36439808 (+) True LOC111194719
XM_007251869.3 mRNA upstream 703490 36188768 ~ 36223035 (+) True rab27a
XM_022679908.1 mRNA upstream 756780 36149295 ~ 36169745 (+) True ccpg1
XM_022679911.1 mRNA downstream 43896 36970710 ~ 37261985 (+) False LOC103026877
XM_022679909.1 mRNA downstream 43897 36970711 ~ 37261985 (+) True LOC103026877
XM_022679912.1 mRNA downstream 43897 36970711 ~ 37261985 (+) False LOC103026877
XM_022679913.1 mRNA downstream 360353 37287167 ~ 37352779 (+) True LOC103046025
XM_007239647.3 mRNA downstream 460680 37387494 ~ 37399839 (+) True LOC103045417
TU220729 other upstream 171838 36754185 ~ 36754687 (+) True G162964
TU219593 other upstream 4207250 32714183 ~ 32719275 (+) True G162096
TU219521 other upstream 4631496 32236316 ~ 32295029 (+) True G162032
TU219503 other upstream 4778335 32068862 ~ 32148190 (+) True G162017
TU219179 other upstream 6048213 30875118 ~ 30878312 (+) False hmgn2
TU220936 other downstream 483178 37409992 ~ 37411969 (+) True G163105

Expression Profile