RNA id: TU220891


Basic Information

Item Value
RNA id TU220891
length 1609
lncRNA type sense_over
GC content 0.43
exon number 2
gene id LOC103046025
representative False

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 37287167 ~ 37352779 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aaaatatgtaaaaaaggcTAAAATCAGGCTTAAGAGATGTTAAGACCACTCATACATAAAGCGATTTACACTGATTATCCAGTAATAAGGGTGCATGTCTTAACCTAGGATATACATTAGACAGTGCCTGAACGGTTGGGTCTCATCGTCATCATGTTGGATGcaagagaaatggtcaaatAAGAAGACCTGTCAGACTTTGAGGAGGACCAGATTGTTATAAGCAGACAACTGGGCTGGAGCATCTCCAAAATGTGTTGGACGTGTTGGATGCGTGATGCTGTGGGCAACTACCAACAGAGGTTTAAGAACCCAGAGACAGGATATAAGAGATAGCTCATCAGTGTAGGAGGACAATGAAGACTAATCCATCTGAGTGGAAGTCAGAAGGGCTAGTGTGGTGCAAGTCTCAGAAATGTTTAATGATGTGTAATTAGATGAGGAATGCTTTACAACACACGTCGCCCAGCACCTCCACCCCACCCCGCTGTGTATCTCTAAACCAATCAGAAAGCCCATGCTAATACCTGTCCATCATCAGAAGTGCCTATAGTGGACTGGACCTTAGAGTAACAGAAGATTGCTGATGTTTTGGCCCTGTTTTGTTTACTCTTACTTTATCTCTTAGTTTGAGGATCTGCTGCTAATGTCTTTGTGCTATTTTCCACAGAGCACCTTCACACGTCTTGTAGAGAAAGCTAACGGacagtgatgctaacagactGCACTGTGTGAGATATGTGTCCAGTGGCAGAAACTGTAGGTAATACACAGATAATGAAAATCACGAATATCttgtaaatgattaaaaagtaataattgtTTCCAGACTGACTGAGTCAAGTTCACAAGTTGTGAAAATCTTTAAACTTTTGAGCAGCAAGCgatgctggagagagagagaggtacaaATACAAGGAGACACTGATGTATTGAGGGGTTGCTGTGTAGCGACAGACAGCCAGTGGCTTGACATGTAGACGAGGACCCTGTGGACTACTCGGGATGACGAGCTTGTAGCAGAGAGGCCTTTAGAGGCTCCACAGCAAGTTATGATTGTCTCTGAGCACTTGTGGAAATTTCACAAGGAGGACAAGTATTGATTGCACTATTGGACACAGCTTTTAGAGGTTTTGAGAGCTAGTTAGAGAGTTTTTGGTCCGActgagcagaaaaaaagaatctgAAAGGGCTAGGGGGAAAAAGAGCGAGTGAGAGTGATTGATTAGAGGGTACTCTGACCCGACCGAGAAACCTGGTCATTAGCAGAGATAAGGACTGCAGAGCATCAATAAAAGCAGCCTGCAGCTGTCAATCAAAAGCGCCTGTCACTCTGGCCCTGTGTCATGTCTCAGCTCACACCTCTCAGACTGAGCGACTCCATCTATCACACCACACTCCTCACAGGACAGTGTACACACTGTACCTCAGAGCTGCACTATCACACTAACCAGTACATTTACATATCTACACCTACAACTACAACTCAACCTTAACTTAACCTGACCCTCAACCTTATCATTTTGGTTCTTAAACAGATCCTAGTGATATATGTACATTTCTTATAAGAGCTAATTGCTCTAAAGAAAAGGCCAGAGCGCTTTTTGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU220893 lncRNA upstream 46310 37300767 ~ 37301122 (+) True G163071
TU220871 lncRNA upstream 96094 37250743 ~ 37251338 (+) True G163049
TU220867 lncRNA upstream 255850 37090108 ~ 37091582 (+) True G163045
TU220856 lncRNA upstream 386879 36959829 ~ 36960553 (+) True G163039
TU220852 lncRNA upstream 390761 36956404 ~ 36956671 (+) True G163035
TU220909 lncRNA downstream 17058 37366118 ~ 37371848 (+) True G163087
TU220910 lncRNA downstream 17058 37366118 ~ 37371848 (+) False G163087
TU220912 lncRNA downstream 17058 37366118 ~ 37371848 (+) False G163087
TU220921 lncRNA downstream 24946 37374006 ~ 37374205 (+) True G163095
TU220944 lncRNA downstream 88508 37437568 ~ 37438049 (+) True G163110
XM_022679911.1 mRNA upstream 85447 36970710 ~ 37261985 (+) False LOC103026877
XM_022679909.1 mRNA upstream 85447 36970711 ~ 37261985 (+) True LOC103026877
XM_022679912.1 mRNA upstream 85447 36970711 ~ 37261985 (+) False LOC103026877
XM_022679413.1 mRNA upstream 907624 36391175 ~ 36439808 (+) True LOC111194719
XM_007251869.3 mRNA upstream 1124397 36188768 ~ 36223035 (+) True rab27a
XM_007239647.3 mRNA downstream 38434 37387494 ~ 37399839 (+) True LOC103045417
XM_022679914.1 mRNA downstream 52468 37401528 ~ 37407914 (+) True LOC103045107
XM_022679916.1 mRNA downstream 106675 37455735 ~ 37507197 (+) True parp6
XM_022679918.1 mRNA downstream 106676 37455736 ~ 37507197 (+) False parp6
XM_022679917.1 mRNA downstream 111012 37460072 ~ 37507197 (+) False parp6
TU220729 other upstream 592745 36754185 ~ 36754687 (+) True G162964
TU219593 other upstream 4628157 32714183 ~ 32719275 (+) True G162096
TU219521 other upstream 5052403 32236316 ~ 32295029 (+) True G162032
TU219503 other upstream 5199242 32068862 ~ 32148190 (+) True G162017
TU219179 other upstream 6469120 30875118 ~ 30878312 (+) False hmgn2
TU220936 other downstream 60932 37409992 ~ 37411969 (+) True G163105

Expression Profile