RNA id: TU220909


Basic Information

Item Value
RNA id TU220909
length 375
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G163087
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 37366118 ~ 37371848 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGTGTAAGGGGCCGCCCGCGCCGTGGTCTTCCCACCACTAGAGGGAGGCCACGCTCTAAGCCAAGTGGTAATCAGCGCGATTAACAACAGCTGGTGTCACTACCTTATAAGGGCTTCCTTCCGGTTCCTCGGCGCAGAGTCTTGAGTATTCCTGTGAGAAAGCAAGACCACGCCGGTTTTCCTAGCGATCTCCTTAGAGTTGCCAAGtggctctctttttctcttcacctctatgagaacagtgtatactgggctcagttcagagaggttctctttattccttctttttctcttcacctctatgggaacagtgtatactgggctcagttcagagaggttctctttattcctttcGGAGCTACCTGCTTCGCTTTA

Function

GO:

id name namespace
GO:0008237 metallopeptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU220891 lncRNA upstream 17058 37347432 ~ 37349060 (+) False LOC103046025
TU220893 lncRNA upstream 64996 37300767 ~ 37301122 (+) True G163071
TU220871 lncRNA upstream 114780 37250743 ~ 37251338 (+) True G163049
TU220867 lncRNA upstream 274536 37090108 ~ 37091582 (+) True G163045
TU220856 lncRNA upstream 405565 36959829 ~ 36960553 (+) True G163039
TU220921 lncRNA downstream 2158 37374006 ~ 37374205 (+) True G163095
TU220944 lncRNA downstream 65720 37437568 ~ 37438049 (+) True G163110
TU221004 lncRNA downstream 176189 37548037 ~ 37548293 (+) True G163161
TU221094 lncRNA downstream 592482 37964330 ~ 37977105 (+) True G163241
TU221103 lncRNA downstream 613210 37985058 ~ 37987068 (+) True G163247
XM_022679913.1 mRNA upstream 13339 37287167 ~ 37352779 (+) True LOC103046025
XM_022679911.1 mRNA upstream 104133 36970710 ~ 37261985 (+) False LOC103026877
XM_022679909.1 mRNA upstream 104133 36970711 ~ 37261985 (+) True LOC103026877
XM_022679912.1 mRNA upstream 104133 36970711 ~ 37261985 (+) False LOC103026877
XM_022679413.1 mRNA upstream 926310 36391175 ~ 36439808 (+) True LOC111194719
XM_007239647.3 mRNA downstream 15646 37387494 ~ 37399839 (+) True LOC103045417
XM_022679914.1 mRNA downstream 29680 37401528 ~ 37407914 (+) True LOC103045107
XM_022679916.1 mRNA downstream 83887 37455735 ~ 37507197 (+) True parp6
XM_022679918.1 mRNA downstream 83888 37455736 ~ 37507197 (+) False parp6
XM_022679917.1 mRNA downstream 88224 37460072 ~ 37507197 (+) False parp6
TU220729 other upstream 611431 36754185 ~ 36754687 (+) True G162964
TU219593 other upstream 4646843 32714183 ~ 32719275 (+) True G162096
TU219521 other upstream 5071089 32236316 ~ 32295029 (+) True G162032
TU219503 other upstream 5217928 32068862 ~ 32148190 (+) True G162017
TU219179 other upstream 6487806 30875118 ~ 30878312 (+) False hmgn2
TU220936 other downstream 38144 37409992 ~ 37411969 (+) True G163105

Expression Profile