RNA id: TU220936


Basic Information

Item Value
RNA id TU220936
length 1522
RNA type TUCP
GC content 0.46
exon number 2
gene id G163105
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 37409992 ~ 37411969 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGTGCTCTTCTCTTTAATAGATCGATCCAGTCTTGGAAAGTACAACACCACAAGGCTGATACACTTTATCTCAACACCTCTTTAAACCCTAATCCCTAAGCGTCACAATCAGAGAAGTAGGTGGATATAAggctgcacacacacaacttacatAGGAGCCGACAGacgagcgagagagtgagcacGAGAGGACAGGAACAGGAAGGGGAGAGGGTAAAGGGAGGAAGTGTGGTGGACTGTGCCCGACCGCTGGCCAACtttaatctctctttctctccgtttCTCTCAAACTAAACCAGCTCTTTCTTTTACCAACTGTGTCCGTCTTCTCTTTATTGCATCTCTTAATTAGCAGATTTGACCCAAGTGCTAAACAGAACCTAGATCTTAAATCACTCTGTTAAAACACAAAAGAATTAGCGGTATTCATAAAATGGGCATCCTACATTTCTCTTCAGttaggaaaaaatatttatgtatatctatatatatatattctggcATTGATTGCCCAAAACCCAAACGTTTCACAAACTCAAATgtcaagtataatacaggatgTAACATTGTCTACAGTAGATGTAGGAGTGCAAACACTAGCACAGTGCAGAGagcacacttatacacacacacagagtaataaaagcacacagagacacagctATGGTCGCAAATGGGTCCCTCTGTATTCAGTCATGAAGCAAGAGCTGTAAGAGGAGCCACTCTGAAGAAGCCAGTTTGTTCTGTGGCCGTTGGAGTGTTCTAGAAGGAGAATCTGCAGACGTGGCTCTGTCGTACAGCTCTTTAACCCTGCGTACTAAAGCAGGCGTGCAGAAAGGCCGCCCAGACTTAAAGCTCTTGTGTAAGGAGTGACATGTATGGCCAATTCTGAACAAAACATTTTAGTGAAAGGTCTAAGACTGGAGAAGCAACCAAGTAAGAACTGACCATCTGTGAGAGAACTATCGTGTTGAAGGAAACTATTGCCAAAACTGGCCTCTAGCAGGAGAAACCTCCTCGCTGACGCTGGAGTGCCAGTCTGCTCGACCTGCCTGCATGGGGGAAGGGGAATGAAAGGTCACAGGgaagggaagatggatggattggagtGGAAGGTCAATCCTGATGAGTCTAGGGCACTGGGACCACACGCATGGTGTTGGTGAATCCGGAGCCTGGACGCCAGCCGGTCAGCACGATCACAACGTCACCAGTCTTGAAGAAGCCTCGAGCCTTgcCGACATCCATGGCGAAGTTCACGCGGAGGTCCACATCCTCTGCCCAAACATCATGAGCGGGTTTGTTGTAGAACACAGGGAAGATGCCGCGGTACAGGTGGGCCTGGCGAGCAGTCTGCCCGTTACGGGTTACTGCAATAATGGGGGCACGGGGGCGGTACCTGGAGATCAAGTGTGCAGATCTAgggaaagaaacaaaaaaaggaaaaaagtgagAATGGAAAAGATTTTACCCTCTATTTTGTTAAAAACTTGGgttaaacatacagtaccagtcaaatgtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU220921 lncRNA upstream 35787 37374006 ~ 37374205 (+) True G163095
TU220909 lncRNA upstream 38144 37366118 ~ 37371848 (+) True G163087
TU220910 lncRNA upstream 38144 37366118 ~ 37371848 (+) False G163087
TU220912 lncRNA upstream 38144 37366118 ~ 37371848 (+) False G163087
TU220891 lncRNA upstream 60932 37347432 ~ 37349060 (+) False LOC103046025
TU220944 lncRNA downstream 25599 37437568 ~ 37438049 (+) True G163110
TU221004 lncRNA downstream 136068 37548037 ~ 37548293 (+) True G163161
TU221094 lncRNA downstream 552361 37964330 ~ 37977105 (+) True G163241
TU221103 lncRNA downstream 573089 37985058 ~ 37987068 (+) True G163247
TU221176 lncRNA downstream 1259313 38671282 ~ 38672233 (+) True G163288
XM_022679914.1 mRNA upstream 2078 37401528 ~ 37407914 (+) True LOC103045107
XM_007239647.3 mRNA upstream 10153 37387494 ~ 37399839 (+) True LOC103045417
XM_022679913.1 mRNA upstream 57213 37287167 ~ 37352779 (+) True LOC103046025
XM_022679911.1 mRNA upstream 148007 36970710 ~ 37261985 (+) False LOC103026877
XM_022679909.1 mRNA upstream 148007 36970711 ~ 37261985 (+) True LOC103026877
XM_022679916.1 mRNA downstream 43766 37455735 ~ 37507197 (+) True parp6
XM_022679918.1 mRNA downstream 43767 37455736 ~ 37507197 (+) False parp6
XM_022679917.1 mRNA downstream 48103 37460072 ~ 37507197 (+) False parp6
XM_022679915.1 mRNA downstream 48104 37460073 ~ 37507197 (+) False parp6
XM_022679919.1 mRNA downstream 48104 37460073 ~ 37507197 (+) False parp6
TU220729 other upstream 655305 36754185 ~ 36754687 (+) True G162964
TU219593 other upstream 4690717 32714183 ~ 32719275 (+) True G162096
TU219521 other upstream 5114963 32236316 ~ 32295029 (+) True G162032
TU219503 other upstream 5261802 32068862 ~ 32148190 (+) True G162017
TU219178 other upstream 6531680 30875118 ~ 30878312 (+) False hmgn2

Expression Profile