RNA id: TU221721


Basic Information

Item Value
RNA id TU221721
length 362
lncRNA type inter_gene
GC content 0.45
exon number 4
gene id G163721
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 39980392 ~ 40013363 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

atacaggggttggagaatgaaactgaaacacctggttttagatcacaataattgattgtggtgacggacagttctggtggaaacaggagagttgaggtgcacattgaattctgcgtgatttgatcagccgtggttttatgttttttttttggatacaatccgggttagcacccgaacatccctttcagacagcttcctcttacagcgtccacagttaatcctgttggatgtggttggtccctggataccgtggctcttgatgcatcacaaagacttgctgtcttggtcacagacgctccagcaagacgtgcaccaacaatttgtcctcttttgaactctggtatgtcacccataatgttgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU221713 lncRNA upstream 51578 39853379 ~ 39928814 (+) True G163713
XR_002651302.1 lncRNA upstream 178200 39799040 ~ 39802192 (+) True LOC111194824
TU221686 lncRNA upstream 186373 39793612 ~ 39794019 (+) True G163693
TU221684 lncRNA upstream 189605 39790365 ~ 39790787 (+) True G163691
TU221682 lncRNA upstream 190335 39789834 ~ 39790057 (+) True G163689
TU221784 lncRNA downstream 44979 40058342 ~ 40058608 (+) True G163769
TU221787 lncRNA downstream 96035 40109398 ~ 40114303 (+) True G163772
TU221788 lncRNA downstream 97708 40111071 ~ 40193224 (+) True G163773
TU221804 lncRNA downstream 186861 40200224 ~ 40200492 (+) True G163789
TU221806 lncRNA downstream 196080 40209443 ~ 40209704 (+) True G163791
XM_022679419.1 mRNA upstream 52474 39838037 ~ 39927918 (+) True LOC103034226
XM_022679430.1 mRNA upstream 159768 39814996 ~ 39820624 (+) True LOC111194742
XM_022679946.1 mRNA upstream 193146 39575089 ~ 39787246 (+) True reln
XM_007242439.3 mRNA upstream 488316 39487766 ~ 39492076 (+) True LOC103038446
XM_022679940.1 mRNA upstream 642514 39271936 ~ 39337878 (+) True pik3c2a
XM_007241020.3 mRNA downstream 251300 40264663 ~ 40270386 (+) True LOC103039568
XM_022679951.1 mRNA downstream 745912 40759275 ~ 40765548 (+) True LOC103036843
XM_022679420.1 mRNA downstream 893778 40907141 ~ 40910721 (+) True LOC111194726
XM_022679953.1 mRNA downstream 1134981 41148344 ~ 41319019 (+) True rab26
TU220936 other upstream 2568423 37409992 ~ 37411969 (+) True G163105
TU220729 other upstream 3225705 36754185 ~ 36754687 (+) True G162964
TU219593 other upstream 7261117 32714183 ~ 32719275 (+) True G162096
TU219521 other upstream 7685363 32236316 ~ 32295029 (+) True G162032
TU219503 other upstream 7832202 32068862 ~ 32148190 (+) True G162017

Expression Profile