RNA id: TU222027


Basic Information

Item Value
RNA id TU222027
length 439
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G163961
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 41081260 ~ 41081698 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gtATACAGGGGttgagaatgaaactgaaacacctggtttcagactacaataattgattgtggtgacgaacagttctggtggaaacaggagagttgaggagcacattgaattctgtgtgatttgatcagccgtggttttatgttttttgggtacaatccgggttagcacccgaacatccctttcagacagcttcctcttacagcgtccacagttaatcctgttggatgtggttggttcttcttggtggtatgctgacattaccctggataccgtggctcttgatgcatcacaaagacttgctgtcttggtcacagacgcgccagcaagacgtgcaccaacaatttgtcctcttttgaactctggtatgtctcccataatgttgtgtgcattgtaatatttagagcagaactgtgctcttaccctgctaattgaaccttca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222023 lncRNA upstream 47016 41033986 ~ 41034244 (+) True G163957
TU222022 lncRNA upstream 50507 41030457 ~ 41030753 (+) True G163956
TU222005 lncRNA upstream 155971 40924965 ~ 40925289 (+) True G163944
TU221951 lncRNA upstream 167672 40857717 ~ 40913588 (+) True G163897
TU221940 lncRNA upstream 305596 40775083 ~ 40775664 (+) True G163886
TU222059 lncRNA downstream 92420 41174118 ~ 41175016 (+) True G163981
TU222060 lncRNA downstream 93619 41175317 ~ 41178149 (+) True G163982
TU222053 lncRNA downstream 241161 41322859 ~ 41324744 (+) False G163977
TU222054 lncRNA downstream 241161 41322859 ~ 41324677 (+) False G163977
TU222055 lncRNA downstream 241161 41322859 ~ 41324677 (+) True G163977
XM_022679420.1 mRNA upstream 170539 40907141 ~ 40910721 (+) True LOC111194726
XM_022679951.1 mRNA upstream 315712 40759275 ~ 40765548 (+) True LOC103036843
XM_007241020.3 mRNA upstream 810874 40264663 ~ 40270386 (+) True LOC103039568
XM_022679419.1 mRNA upstream 1153342 39838037 ~ 39927918 (+) True LOC103034226
XM_022679430.1 mRNA upstream 1260636 39814996 ~ 39820624 (+) True LOC111194742
XM_022679953.1 mRNA downstream 66646 41148344 ~ 41319019 (+) True rab26
TU220936 other upstream 3669291 37409992 ~ 37411969 (+) True G163105
TU220729 other upstream 4326573 36754185 ~ 36754687 (+) True G162964
TU219593 other upstream 8361985 32714183 ~ 32719275 (+) True G162096
TU219521 other upstream 8786231 32236316 ~ 32295029 (+) True G162032
TU219503 other upstream 8933070 32068862 ~ 32148190 (+) True G162017

Expression Profile