RNA id: TU222060


Basic Information

Item Value
RNA id TU222060
length 369
lncRNA type intronic
GC content 0.44
exon number 3
gene id G163982
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 41175317 ~ 41178149 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cacctcctccaagctcactctgcctcattgtACCTTACTGTACTATGCTGTACCCACTTTaacacactttacctcactgtaCCACACTACCACCCTCTATCTCACTTTACTGtgctataccctaatatacctcactgtaccgtactcttcctcacactaccacactctatactgtactgtaccctgCAATACCTCACTGTACTCTGCAATACCTCGCTATTCCTCACTGTATACTGCGATACTCCACTATACCTTAATTTTTCTCACACTACCACACTGTACCCtgctatactccctatactttaCCTCACCTTTACCTCACTGTACCCttctatacctcactatactttattctaccacactgtaccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222059 lncRNA upstream 301 41174118 ~ 41175016 (+) True G163981
TU222027 lncRNA upstream 93619 41081260 ~ 41081698 (+) True G163961
TU222023 lncRNA upstream 141073 41033986 ~ 41034244 (+) True G163957
TU222022 lncRNA upstream 144564 41030457 ~ 41030753 (+) True G163956
TU222005 lncRNA upstream 250028 40924965 ~ 40925289 (+) True G163944
TU222053 lncRNA downstream 144710 41322859 ~ 41324744 (+) False G163977
TU222054 lncRNA downstream 144710 41322859 ~ 41324677 (+) False G163977
TU222055 lncRNA downstream 144710 41322859 ~ 41324677 (+) True G163977
TU222076 lncRNA downstream 147059 41325208 ~ 41325426 (+) True G163998
XM_022679420.1 mRNA upstream 264596 40907141 ~ 40910721 (+) True LOC111194726
XM_022679951.1 mRNA upstream 409769 40759275 ~ 40765548 (+) True LOC103036843
XM_007241020.3 mRNA upstream 904931 40264663 ~ 40270386 (+) True LOC103039568
XM_022679419.1 mRNA upstream 1247399 39838037 ~ 39927918 (+) True LOC103034226
XM_022679430.1 mRNA upstream 1354693 39814996 ~ 39820624 (+) True LOC111194742
TU220936 other upstream 3763348 37409992 ~ 37411969 (+) True G163105
TU220729 other upstream 4420630 36754185 ~ 36754687 (+) True G162964
TU219593 other upstream 8456042 32714183 ~ 32719275 (+) True G162096
TU219521 other upstream 8880288 32236316 ~ 32295029 (+) True G162032
TU219503 other upstream 9027127 32068862 ~ 32148190 (+) True G162017

Expression Profile