RNA id: TU222076


Basic Information

Item Value
RNA id TU222076
length 219
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G163998
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 41325208 ~ 41325426 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cccagagactgtaaaaaaaggtggacgccgtgtcgccgttcccattcatttaatgaaaatgaagccaaaatcttcctccatgttggcgatcctgatacccgagtctgtagagcgcagtagagaccagaggagggagaaagactgtggagagacagcctactcatttaaataaccccgcccctgagggctgcctcgaggtcacaggctgcagagcggagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222053 lncRNA upstream 464 41322859 ~ 41324744 (+) False G163977
TU222054 lncRNA upstream 531 41322859 ~ 41324677 (+) False G163977
TU222055 lncRNA upstream 531 41322859 ~ 41324677 (+) True G163977
TU222060 lncRNA upstream 147059 41175317 ~ 41178149 (+) True G163982
TU222059 lncRNA upstream 150192 41174118 ~ 41175016 (+) True G163981
XM_022679953.1 mRNA upstream 6189 41148344 ~ 41319019 (+) True rab26
XM_022679420.1 mRNA upstream 414487 40907141 ~ 40910721 (+) True LOC111194726
XM_022679951.1 mRNA upstream 559660 40759275 ~ 40765548 (+) True LOC103036843
XM_007241020.3 mRNA upstream 1054822 40264663 ~ 40270386 (+) True LOC103039568
XM_022679419.1 mRNA upstream 1397290 39838037 ~ 39927918 (+) True LOC103034226
TU220936 other upstream 3913239 37409992 ~ 37411969 (+) True G163105
TU220729 other upstream 4570521 36754185 ~ 36754687 (+) True G162964
TU219593 other upstream 8605933 32714183 ~ 32719275 (+) True G162096
TU219521 other upstream 9030179 32236316 ~ 32295029 (+) True G162032
TU219503 other upstream 9177018 32068862 ~ 32148190 (+) True G162017

Expression Profile