RNA id: XM_007230030.2


Basic Information

Item Value
RNA id XM_007230030.2
length 1395
RNA type mRNA
GC content 0.48
exon number 10
gene id ndufa10
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 2942774 ~ 2963551 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGACGCTGTAATCGCGCGACGGTGGGGGCGGTGCTGTAGGGGGGACAGTGAGGCCGCAGGGACCCTGTAGGTTAAACAGAGGataatattcatatttacaGCGTTTAAAGGTGGTTTGAAGGGATTTGAAGGCTGTATTGTGGGAGATGGCGCTGCAGGTGGTGCGGCTGATCGTGCCCGTGGGTTCAACGGCGTTCAGAGCGGCCGGAGGAGCGGCTGGAATCCACACATCGACACTCAGGAATCTTGAGTATGGGCCGTTGGCTTATTTACTGGGTGATAGAACGACTCCCAGGCTTCATAAATACAGCAAGATTATCACTGTGGATGGAAACCTGGCATCCGGGAAAGGAGTACTGGCACAGACGTTAGCTGAAAAGCTGGGAATGCTGTACATGCCTGAGCCTGATGTTAACTATCTGGACAAAGTGACCAATGAGAAGGTCCCTCTGGACCCAATCTTCAATGGTGACTGCAGTCTGGAGAAGTTCTACACCGATCCCAAAGCAAAAGACGGAAACTCGTACCGCCTGCAGTCCTGGATGTACAGCATGAGGATATTTCAGTACTCGGACGCTCTCGAGCACCTTATCAGCACAGgcCAGGGAGTTGTCCTTGAACGGTCTCCATTTAGTGACATGGTGTTCATGGAGGCCATGTTCAGTCAAGGCTACATAAGGAAACAGTGTGTGGATCACTACAACGAGATTAAGAGCATCAGcatctgtgagtttctgccccCTCACCTGGTCATCTACGTAGACTCTCCTGCTGAGGAGGTTCAGAAGAAACTCAAGGCATCTGACAAAcCATATGTCCAGAATGTACCACTCCCCTACCTTAAAAGCATTGAGACTTCATACAAGAAGAACTTCCTTCCCCAAATCAGtAAGGACTCTGAATTGCTTGTGTATGATACAACACAAGCCCAGGACATTGAGAAGATCCTGGAGGATATTGATTACCTGAAGTTTGATAAAGGCCCGTGGGTAGACCAGGATGACAATAGCTTCCACCACATGAGGATGCTGGTTCAGGATAAAGAGAAAGTGGCCAATTTGATGATAGTTCCCATTTACCTCCCAGAGATCACCATTGGTGGACTTGAGATTGACAAAACCTACTACGCATACACATCGCTTCCAGGGAAGAAGTACGGAAAGGGTTACAATGAAGACGTAGGAGATAAATACATCTGGCTGAAGTGAGCAGCTGACTGCTCGAACATGTCCGAATGGGAGGAGAAGCTTATGTTATTCCTTCTTTACCCTCCAATGTACTTGTCTGTCCACGTCCCGTGGGAGGTGAGATGAGTAAAACCTGATTATGTATTCTGCAGTTCTGCAGCTGAACTTCTGTAAattgttattaaaaataaactatatgttTGAAAA

Function

GO:

id name namespace
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0016773 phosphotransferase activity, alcohol group as acceptor molecular_function

KEGG:

id description
K03954 NDUFA10; NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 10

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU211296 lncRNA upstream 114500 2827596 ~ 2828274 (+) True G155809
TU211279 lncRNA upstream 162403 2780128 ~ 2780371 (+) True G155793
TU211278 lncRNA upstream 162891 2779587 ~ 2779883 (+) True G155792
TU211271 lncRNA upstream 171921 2770090 ~ 2770853 (+) True G155785
TU211248 lncRNA upstream 208110 2734462 ~ 2734664 (+) True G155765
TU211350 lncRNA downstream 27408 2990959 ~ 2991367 (+) True G155854
TU211353 lncRNA downstream 52153 3015704 ~ 3035326 (+) True G155856
XR_002651196.1 lncRNA downstream 66024 3029575 ~ 3030104 (+) False LOC111194715
TU211355 lncRNA downstream 66092 3029643 ~ 3030986 (+) True LOC111194715
TU211364 lncRNA downstream 156484 3120035 ~ 3121160 (+) True G155866
XM_015606067.2 mRNA upstream 4704 2882827 ~ 2938070 (+) True LOC103044837
XM_022679486.1 mRNA upstream 136020 2792039 ~ 2806754 (+) True parp9
XM_022679487.1 mRNA upstream 136020 2792630 ~ 2806754 (+) False parp9
XM_022679482.1 mRNA upstream 227050 2671503 ~ 2715724 (+) False lrch3
XM_022679492.1 mRNA downstream 647467 3611018 ~ 3614491 (+) True LOC111194753
XM_015601072.2 mRNA downstream 894955 3858506 ~ 3899215 (+) True LOC103025504
XM_022679493.1 mRNA downstream 897107 3860658 ~ 3899215 (+) False LOC103025504
XM_007232420.3 mRNA downstream 965780 3929331 ~ 3932163 (+) True LOC103025196
XM_022679498.1 mRNA downstream 1014201 3977752 ~ 3999462 (+) True LOC103036562
TU211262 other upstream 187662 2738361 ~ 2755112 (+) True G155776
TU210855 other upstream 1673395 1265820 ~ 1269379 (+) False G155491
TU210857 other upstream 1674579 1265820 ~ 1268195 (+) False G155491
TU210859 other upstream 1674579 1265820 ~ 1268195 (+) False G155491
TU210867 other upstream 1728111 1203741 ~ 1214663 (+) False LOC103036073
TU211750 other downstream 2193603 5157154 ~ 5157400 (+) True G156188
TU212485 other downstream 4408825 7372376 ~ 7431568 (+) False LOC111194759
TU212490 other downstream 4423951 7387502 ~ 7404556 (+) False LOC111194759
TU212659 other downstream 4637016 7600567 ~ 7606668 (+) True G156840
TU212948 other downstream 5606379 8569930 ~ 8570877 (+) True G157055

Expression Profile