RNA id: XM_007231092.2


Basic Information

Item Value
RNA id XM_007231092.2
length 3647
RNA type mRNA
GC content 0.57
exon number 25
gene id LOC103026225
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 23377869 ~ 23673136 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGACTTTCTATCTTTTATAGATTATTCCTCTGAAACGGGAGAGGAGAGTGGATCTGTACACTGAGTCCTCGGCTGAACTCTGATCTCTGACCACTGAACTGGTACCAGGATATAAACGGGACAGGGCTTGAGTGACAGCGGACCTGTATGCACTGTGACTGTCATCAAAAAGgcGGAGCTTTAATGAAGAGACAGATCTGTTAACGGTCTTTGGGAAGGGGACCCTTCAGAGCGAGGATGGGGTCACCATGGAAACCACTGCTCATGCTGTCAATTATCAGCGGCCTGGCAGACTTTGCCAGATCGGTAGCGGGTAGACCCGTGTCCTACGCGGCTGTGCTGCGGATGAAGCCGgacagctcctcctcctccctgctGACCCCTCGCTCCAGACCCCGGCAGGACCACGGCTCCTTCGCTCAGGACTGGCCCCCGTTCTCCAGGCAGAGGCTGTCGGCCCTCAGCTCTCAGGAGGACTACCGCAGCGAAGAAAGTGAAGAGTACGGGCCAGTGTTCATCCAGGAGCCTGACGACGCTATCTTCTCCCTGGACTCGGATGATAAGAAAGTCATGATGAGCTGCGAAGCGAGAGGAAACCCTGCTCCCACCTACAGTTGGCTGATCAATGGCACAGATGTGGATGTAGAGGCGGATTTCCGCTACAGTTTGATTGACGGAAACTTGATAATAAACAACGCCAGCGAAGCCATTGATTTCGGGAAGTACCAGTGCAGAGCGGAGAACAGCGTTGGAACCGTCCTGAGTCGAGAAGCTCTCCTGCAGTTCGCCTACCTGGGTGTTTTCAGCACTCGAGCGAGAGGAGGCGTGTCTGTGAGAGAAGGTCAGGGGGTTGTGCTCATGTGTACCCCTCCTCCACATTCACCAGAGATCATCTACAGCTGGGTGTTCAACGAGTTCCCCTCGTTCGTGGCGGAAGACAGCCGGCGCTTCATCTCGCAGGAGACGGGCAATCTGTACATCTCCAAAGTGCAGCCCTCGGACGTGGGCAGCTACATCTGCCTGGTGAAGAACACTGTGACCAACGCGAGGGTCCTGAGCCCGCCAACGCCACTCACGCTCAAAACAGATGgTGTAATGGGAGAGTATGAGCCAAAGATCGAGGTCCACTTCCCTCCTACAGTTCTGGCGGCTAAAGGAGTGACTGTGCGACTGGAGTGCTTTGCCCTGGGGAACCCTGTTCCGACGATTACCTGGAGGAAGATCAATGGAAACATTCCCAAAAAGGCTCGTCTGCGCAAGTCCCAGGCTGTGCTGGAGATCCCCAACATTCAGCTGGAGGATTCGGGAAGCTATGAGTGCAAAGCAGAGAATTCACGAGGAGGCACTGCCTTCCGGGGACACCTCCAGGTGTACACCATGCCCCAGTGGACCAGTATGATAAATGACTCCCAGTTGGACAGTGGGGAGCAGTTACAGTGGGAGTGCAGAGCAACGGGGAAACCCAGACCCTACCGCTGGCTACGCAACGGAGAACCTCTGACcccacagAACAGAGTGGAGATGCTGAACGGAGAGCTGATCATCCACCGAGTGCAGCAGGCCGACTCCGGCATGTACCAGTGCGTCGCCGAGAACAAGTACGGGGCCATCTACTCCAGCGCGGAGCTGAAAATACTGGCTTCAGCACCCATGTTCAACACGAACACAGTGACCATCATCGCCACCATGGGTAAAGACGTTTCTCTGGAGTGCAGACCACGAGCTTCTCCCAAACCCAGGATCACATGGAATAAAGGAGACAGGAGAGTCCAGGCCAGCAGGAGAATTATGCTGCTCCGCAACAACACGCTGCGTATCATCAACTCCAGCCGCGCTGACGAGGGGAGCTATGTGTGCCAGGCTGACAACCAGTTTGGCTCAGCCGAGATGACCACCACCCTGCTCGTCAAAGAGGCCATGAAGGTGGAGCTGAGCCCGAAGCGCGTGGAGGTGACGGTGGGGGAGAGCGTGGTGCTCAGCTGCAAGGCCACACACGACCCCTCGCTCGACGTCAACTTCCTCTGGCTGCTCAATAACCAGCCTCTCAATGCTCAGCAAGGCGGAGGCCACTTCGAGTACATCCGAACACAGTCCTCCACGGCGGACCTGATGATCAGAAGCATCTTGCTGAAGCATGCTGGGAAATATGGCTGCCGGGTGCAGACGACTGCGGATACGGTGCTGGCTGAAGCCGAGCTGCTTGTGAGAGGCCCCCCGGGACCCCCTGGAGTGGTGATTGTTGAGGAGATCACTGATACCACGGCGACGCTCTCGTGGAGCCACGGCGTGGACAACCACAGCCCAATCACCACCTATAACCTTCAGGCTCGCAGCCCCTTCTCTCTGGGCTGGCAGACCGTCAAAACAGATCCAGAGCCAGTGACTGGAGACATGGAGTCTGCCATGGCTATTGAGCTGAACCCCTGGGTGGAATACGAGTTCCGAGTGGTGGCCACCAACTCTATCGGCACAGGAGACCCCAGCGCACCGTCCAGGGCGGTCCGAACTAAAGAAGCAGTTCCGTCTGTAGCGCCAACCAACGTGAGCGGAGGGAACGGGCGCAGGCACGAGCTGGTGGTATCCTGGGAGCCTGTATCTGAAGAGTTCCAGAATGGGGAGGGCTTTGGATACATAGTGGCTTTCCGAGCCAACGGGACTCGAGGGTGGAAGGAAAAGATGGTGACTTCGGCAGACTCCACCACCTACAAGTACAGGGACGAGACGTTTCCACCCCTGACCCCGTTTGAAGTGAAGGTGGGCGTGTACAACAACAAAGGCGATGGACCCTTCAGTAAAGTCGTCACCGTGTTCTCTGCAGAAGGAGAGCCCCGGGAAGCCCCCACTGAGGTGAAAGCGTCTGCCATGTCGTCCTCCGAGATCAAGGTGATATGGAAGGCGCCAAACCCCGGTCCTGGAAGACCTCAGGGGTATGAGGTGAGCTACTGGAAGGACATGGAGCAGGAGGAGTCggggaagaagaagaggacgGTGGGGAACGAGACGGCCATGCTGCTCTCAGGTCTGGACGGGAACACGGTGTATCTGATCACAGTCAAAGGCTTCAACAGCATCGGTCAGGGTCCGCCCAGCGCTGCTATCAGAGTCAACACAAAGAAAAACCCTCCAAGCCTGCCACCAGGTAACGTGATGTGGATTCAAGAGGGCAACAATGTGTCTTTATCTTGGGATCCAGTGAAGGCCATGGAGAACGAGTCAGACGTTATTGGATACAAGGTGTTACTGCGTCAGGAGGGGCGGGGTCACAGTCAGGTGATGCGGACCCCAAACTCGGCCGCGGTGCTGGTGCTTCCTGAAGGAGGCACGTACATCATTGTGGTGCGTGCAGTCAGCGAGGGGGGCGAGGGGGCCGCCAGCTCTGAAATAAGAGTACTCACATCCTCAGgtgtGCGGGCGAAGAGTGGACAGCTCTCTGTGCACACTCTGCCATCCAACTTAGTATGGACTCCTTTACTCCTGGTCCTGATGGTGCCTTCTGCCCCCTGGTGAGGCTATCGAGCCATGCCCACCCCCTGCCCACAACCCAGccctgacccccccccccccctcaaaaACACCCCGCTACGGAGGGAATAGACTCTCTCCACTCCACACAGACTGCCTACGCCAGCCTGGACCATCTTCAGAAC

Function

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0031225 anchored component of membrane cellular_component
GO:0005886 plasma membrane cellular_component

KEGG:

id description
K06763 CNTN5; contactin 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU217113 lncRNA upstream 125052 23252077 ~ 23252817 (+) True G160216
TU217109 lncRNA upstream 138778 23238731 ~ 23239091 (+) True G160214
TU217107 lncRNA upstream 150135 23227414 ~ 23227734 (+) True G160212
TU217052 lncRNA upstream 411278 22965333 ~ 22966591 (+) True G160168
TU217043 lncRNA upstream 429680 22911559 ~ 22948189 (+) True G160160
TU217161 lncRNA downstream 188807 23861943 ~ 23915300 (+) True G160253
TU217235 lncRNA downstream 446743 24119879 ~ 24120092 (+) True G160308
TU217241 lncRNA downstream 469262 24142398 ~ 24143111 (+) True G160314
TU217248 lncRNA downstream 506527 24179663 ~ 24179956 (+) True G160321
TU217262 lncRNA downstream 548665 24221801 ~ 24223581 (+) True G160325
XM_022679757.1 mRNA upstream 282993 23060575 ~ 23094876 (+) True LOC103030816
XM_007235622.2 mRNA upstream 484568 22892472 ~ 22893301 (+) True LOC103027426
XM_022679750.1 mRNA upstream 561471 22813535 ~ 22816398 (+) True LOC103027133
XM_007235620.2 mRNA upstream 641240 22728533 ~ 22736629 (+) True LOC103026853
XM_007235619.3 mRNA upstream 650423 22722720 ~ 22727446 (+) True rnf7
XM_022679758.1 mRNA downstream 74606 23747742 ~ 23913263 (+) True LOC103025495
XM_022679759.1 mRNA downstream 74606 23747742 ~ 23913263 (+) False LOC103025495
XM_022679760.1 mRNA downstream 74606 23747742 ~ 23913263 (+) False LOC103025495
XM_007231088.3 mRNA downstream 270557 23943693 ~ 23949888 (+) True LOC103024981
XM_022679762.1 mRNA downstream 546723 24219859 ~ 24614929 (+) False nectin1
TU217011 other upstream 523788 22853412 ~ 22854081 (+) True G160134
XR_002651264.1 other upstream 754562 22622839 ~ 22623307 (+) True LOC111194779
TU216738 other upstream 1225084 22147844 ~ 22152785 (+) True G159926
TU216515 other upstream 2366075 21009302 ~ 21011794 (+) True G159748
TU216494 other upstream 2640820 20736598 ~ 20737049 (+) True G159728
TU217233 other downstream 445993 24119129 ~ 24119825 (+) True G160306
TU217966 other downstream 3076243 26749379 ~ 26755313 (+) False LOC103021732
TU218064 other downstream 3232108 26905244 ~ 26907627 (+) True G160919
XR_002651269.1 other downstream 3436535 27109671 ~ 27117211 (+) False ccnl1
TU218548 other downstream 4948992 28622128 ~ 28624785 (+) True G161292

Expression Profile