RNA id: XM_007231544.3


Basic Information

Item Value
RNA id XM_007231544.3
length 3040
RNA type mRNA
GC content 0.52
exon number 6
gene id LOC103040346
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 27969058 ~ 27977682 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CAGTCGCCCCCCCATGCCTGCCTGCTCTGGCACTGCTGCTGTGGGCGGTGTGTGAGGCTGTAGTGGGCATGCCTGCAGAGGAGCAGTGTGTGTACTTGGACAGTGCACAGCATCTGGACACTGTGGGTCTGTCTCAGGACGGTGACGTGGTCATCGGGGCGCTCATCAATGTCTATATCCTGCCTGAGACGCTTGACCTGAGTTTCACAAAACAGCCCAACCTGCAGTCATGCTCCGAttttcaggagagtCCTGTGCAGTGGGCTCAGGCGATGGTCTTTGCTGTGGAAGAGATCAACAGAAACCCCTCTCTGCTGCCGGGGGTCCGGCTGGGTTACCGCATCATGGACAGCTGTACACGTCTCCCCTTCAGCCTTAGAGCAGCTCTGTCCATGATCAGTGGAGGAAACGGCACCTGTGAGACCACGAGACCCGTCAAACTCATCATCGGGGATCCATCATCAACCCAGTCCCTCATTCTCTCCAAAACTCTCAGCCCCTTTAATGTGCCCATGATCAGCTATCTGGCTACATGTTCATGTCTCAGTAACAAACGTGAGTACCCCAACTTCTTCCGCACCATCCCCAGTGATGCGTATCAGGCCCGCACCATGGCCCAAATGGCCAAGCGCTTCGGCTGGACCTGGGTTGGTGCTGTGGTGGCAGACAACGACTACGGCCTGCTGGCGGTTCAGGCGTTCCAGGAGGAGACTAAGGGTACAGGGATCTGCCTGGCCTTTGTCAGGACACTCTTTCGGGAGCGACTAGCCAAGGACGTCGCCCGTGCAGTGTCAGCCGTGATGGCCTCATCTGCTCGAGTGATCCTGGTGTTCGCCTGGTATGTGGACGTAGAGGTGTTCCTCACTGAGCTTGTTCTTAGGAATGTGACAGACCGCCTTTTCCTGGCCAGTGAGATCTGGAGCACTAGTGGCCGACTCCTTAGTAACCCCCAGCTGTACACCATCGCACAAGGCACGCTGGGTGTGGCCATCAGAAGTGCCCCCATCCCAGGGTTTGATAAACACCTGCAGCAGCTCCATCCCTCCCGTTACCCTCGGGACACACTGCTCAGGGTGCTGTGGGAGAGGACGTTTGGCTGCAACCCCTTCTGGAACTCTTCGGCTGGCTCTCAGAGCAGCTTGCCGCCCTGCAGAGGAACAGAGAGCCTAAAGGGGGTTCAGAATGGCGTAACGGACGTCTCCAACCTGAGAGTCACTTATACCGCCTATTTAGCTGTTTATGCAGCAGCACATGCACTTCATTCTCTGCTGGCCTGCACTGCAACTAACAGCTCTGACCCCAGCGTGACCCCAGGCTGCTCTTCTCCAAATAACATTACTCCAGAACAGgtCTTGGAGCACCTTAAGCTGGTGAACTTCACCACCCAGCTTGGGGAGAAATTTTATTTTCAGGACGGGGAGACTCCAGCTGTGTATGACCTGGTGAACTGGCAGCGGGGCCCTGGAGGGACCCTGCAGTATGTCCTCATCGGCAGAGTGGAGGGCTCTCAACTCATCATTAATGATTCTGCGATCAGCTGGCCAGGCAGTTCGGACAAGGTGCCTGTGTCAGTGTGCACTGCTCTATGTCCTCCAGGCACACGTAAAGCCATAAAGAAGGGACTGCCGGTCTGCTGCTTCGACTGCCTGCCTTGTGCTGAAGGCGAATTTAGCAACATCACAGGTTCTTCCGAATGCCACCACTGTCCTCCTGAATTCTGGTCCAACAGTCTCAGGAACGCATGCATTCCACGAGAAGTTGAGTATTTATCCTTCAACGAGACCATGGGCATCACTTTGACGACCGTGGCTGTGACCGGTGCCATCACGACTGCAGCTGTAGCTGTGGTTTTTGTGTACCACAGACAGACTCCTATTGTCAAGGCCAACAACTCAGAGCTGAGCTTCATGCTCCTACTGTCGCTCAAACTCTGCTTCCTGTGTTCGCTGATCTTCGTGGGTCAGCCCTCGACGTGGTCGTGCAGGGTGCAGCAAGCAGCGTTCGGCATCAGCTTTGTTCTCTGCATCTCTTGTATCCTGGTCAAAACCATTGTGGTTCTGGTCGCCTTTCGCTCATCCAGGCCGGGATCTGCGGGTCTTATGAAGTGGTTTGGACCCGGCCAGCAGAGGGGAAGCGTCCTGTTCTTTACCTCCATCCAGGTGATAATCTGTGCTGTATGGCTGTCACTCAGCCCACCATTACCACAGCGCAACTTTGGTATTCAGGGGTCAAAAGTCATCTTAGAGTGTATGGTGGGCTCTGTGGTGGGCTTCTCCCTGGTGCTGGGCTACATCGGCCTGTTGGCAGCCGTCTGCTTTCTACTTGCCTTCTTCGCCCGGAAGCTTCCAGATAATTTCAACGAGGCCAAATTCATCACCTTCAGCATGCTGATCTTCTGCGCTGTGTGGATCGCCTTCGTTCCAGCATATGTCAGCTCTCCGGGGAAGTACAGCGTCGCTGTGGAGGTCTTTGCTATCCTGGCTTCAAGTTTTGGCCTTCTGGTGTGTATATTTGTCCCAAAATGTTACATTATCTTACTGAGACCGGAAAACAACACCAAGAAATTCCTGATGGGGAAAACTCAGTAGCGAATGCATTGGTTTAGTGTTAAAGaagaaatctggtgtaaaatgaacttggggtgtagtgaaacataataatgagtacaaacgtttgttaaatagcccacgaCTGTTCACTCCCAGCATTCCTATATATATTGCTGTTAGACAATGCTCCCaataggcttacaatgctagtgataggagcatagtgttgcccatgcaaagaaatagcttttttttacaccattaacaaactcaaagtagctccacgctTCATTGGCAAAATCAAACAGGAGTGAATAGCTAGGACAGGGGAACACAGAAtgcaaaatgaattctgtggaaatgcatgaatattactgatattttcagcaacagctgaaaCCCATGCTTTTCCACAGAATGTCCACAGAACCTGTGCACTTTTACCTCacagtgcctcattttaaataacaGGGCCCTCAGatttctaccaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU218309 lncRNA upstream 75581 27893087 ~ 27893477 (+) True G161129
TU218294 lncRNA upstream 173415 27785032 ~ 27795643 (+) False c18h3orf33
TU218293 lncRNA upstream 185869 27780854 ~ 27783189 (+) True G161115
TU218251 lncRNA upstream 341636 27602859 ~ 27627422 (+) True G161080
TU218250 lncRNA upstream 382288 27586529 ~ 27586770 (+) True G161079
TU218351 lncRNA downstream 52931 28030613 ~ 28035195 (+) True LOC111194734
XR_002651201.1 lncRNA downstream 53177 28030859 ~ 28032190 (+) False LOC111194734
TU218353 lncRNA downstream 53716 28031398 ~ 28032184 (+) False LOC111194734
TU218493 lncRNA downstream 388486 28366168 ~ 28394028 (+) False G161243
TU218490 lncRNA downstream 410969 28388651 ~ 28392768 (+) False G161243
XM_022679983.1 mRNA upstream 3368 27805063 ~ 27965690 (+) True plch1
XM_007231545.3 mRNA upstream 172554 27784896 ~ 27796504 (+) True c18h3orf33
XM_015600826.2 mRNA upstream 190592 27762391 ~ 27778466 (+) False slc33a1
XM_007231546.3 mRNA upstream 190592 27762407 ~ 27778466 (+) True slc33a1
XM_007232086.2 mRNA upstream 539277 27423510 ~ 27429781 (+) True ssr3
XM_007231561.2 mRNA downstream 93809 28071491 ~ 28077732 (+) True LOC103045576
XM_022679804.1 mRNA downstream 195928 28173610 ~ 28177986 (+) True LOC107196882
XM_022679806.1 mRNA downstream 196153 28173835 ~ 28177986 (+) False LOC107196882
XM_022679803.1 mRNA downstream 203000 28180682 ~ 28184907 (+) True LOC103044051
XM_022679808.1 mRNA downstream 208068 28185750 ~ 28195714 (+) False LOC111194790
XR_002651269.1 other upstream 851847 27109671 ~ 27117211 (+) False ccnl1
TU218064 other upstream 1061431 26905244 ~ 26907627 (+) True G160919
TU217966 other upstream 1213745 26749379 ~ 26755313 (+) False LOC103021732
TU217233 other upstream 3849233 24119129 ~ 24119825 (+) True G160306
TU217011 other upstream 5114977 22853412 ~ 22854081 (+) True G160134
TU218548 other downstream 644446 28622128 ~ 28624785 (+) True G161292
XR_002651275.1 other downstream 768014 28745696 ~ 28759007 (+) False fam219b
TU218604 other downstream 1093138 29070820 ~ 29116795 (+) True G161331
XR_002651288.1 other downstream 2897356 30875038 ~ 30878327 (+) True hmgn2
TU219178 other downstream 2897436 30875118 ~ 30878312 (+) False hmgn2

Expression Profile