RNA id: XM_007231546.3


Basic Information

Item Value
RNA id XM_007231546.3
length 2726
RNA type mRNA
GC content 0.48
exon number 7
gene id slc33a1
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 27762391 ~ 27778466 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGTGGTTTGAGTGCTGCACCAGTGCAGACGCTGCGCTTCCTCGGTTTGTGGAGAGTGAAACTTCAGgagcagagagaaaacaggagGGTATATCTACACTAAACACCCCGCAAACACACCCGCACGCTAAACACACcgcacacaccttcacacagaGGATAATAGACCGTCTCATTTACCTTAATTCACTTTAAACCCTCGCGCCTGCATTCAGAACCGACATGCCGTACGGTGTTTCATCATGACAGGACATTTGCAGGCACAGCTGGTTTGAAGCCCTGCAAGCAAACATGGAGCTGTCTGAGTCCGTAAGGCATGCGAACGGGAGGCAGAGGAAACCTGTGGTGGTCATGAGTGATCAGGAAACTGTAGATGATGAAGAAGCCCTCATTCAGGACTCGGACAGCGGTGACAGAGCCCCCAGAGGTCACTGCAGTATCAGAGGAGAACTGGGCAATGTGTCCCTGCTGCTTTTCCTCTACGTCCTCCAGGGAATTCCGTTAGGACTGGCCGGCAGCATCCCGCTGGTCATGCAGAGCAAGAACGTCAGCTACAAAGACCAGGCCTACTTCAGCTTCGTCTTCTGGCCCTTTAGCCTGAAGCTGCTGTGGGCGCCACTGGTGGACTCGCTCTACATCCGGCGGTTCGGCCGGAGGAAATCCTGGCTGGTGCCCACTCAGTACCTCCTGGGGCTCTTCATGCTGGGGCTGTCGTTCACCGTGGACTCTCTGCTGGAGCAGAACGGATCAAAAGGACCAGACGTGGTCAGCTTGACCGCCGTCTTCTTCATGCTGGCTTTTCTGGCAGCCACACAGGACATAGCAGTAGACGGCTGGGCGCTGACCATGCTGTCCAGAGAGAACGTGGGATACGCTTCTACCTGTAACTCTGTGGGCCAGACTGCTGGATACTTCCTGGGGAATGTGCTGTTCCTGGCTCTGGAGTCAGCTGACTTCTGTAACAAGTACTTGAGGTTTGAGCCACAGCAAAAAGGGATTGTTACTCTGTCAGATTTCCTGTTTTTCTGGGGAATCGTGTTTATGGTGTCAACTACTCTTGTGGCCATCATAAAGAAGGAGGACAGCAGACAGCAGCACTCCAAAAAAAGGATGAAAGAGGAAACACATGGAGTTCTGGAGACCTATAAACAACTGTTCTCCATCATTAAGATGCCTGCTGTCTTCACCTTCTGCTGCCTGCTCCTCACATCCAAGaTGGGCTTTTCTGCAGCAGACGCTGTAACAGGACTAAAGCTTGTGGAAGCAGGTGTGCCTAAAGCTGAGCTGGCTCTCCTGGCTGTTCCCATGGTACCCCTGCAGATTCTGCTTCCGgtgatcatcagtaaatataCAGCTGGACCTCGACCTCTTGACATCTTCTACAAAGCCTTTCCTTTCCGCTTGCTGATAGGTCTGGAATATGCTCTGCTGGTGTGGTGGACTCCCAGTGTGAAGCATGAGGACGGCTTCCCTGTGTATTACTATGCTGTAGTGCTGCTCAGTTATGCTGTGCATCAGGTGGCACTGTACAGCATGTATGTGGCCTGCATGGCTTTTCATGCTAAGGTAAGCGATCCACTGATAGGGGGCACTTATATGACTCTGCTGAACACAGTGACCAATCTGGGGGGAAATTGGCCCTCCACTCTCGCCCTGTGGCTGGTGGACCCCCTCACATCTAAAGAGTGTCAGGGAGCAGTTGGCCAGACATGTGGGTCTCCTGAAGAAGCTGGGTTGTGTGTTAAAGAAGGTGGCATGTGTGTGACGGCGCTGGATGGCTACTATGTGGAGTCTCTGGTGTGTGTGGTAATTGGCCTGTGTTGGTGGATATTCTTCGGGAAGAAAATGAAGCGGTTACAGGAGGAGAGCCCAGCAGCGTGGCACTGCAGGGTCCGCAAATAGCACTAATACAAATGGACACAATGAGCCCAAAGCCTCGGACTTCTAAAGGAACTGTTCAAatgctaacattgctaacaatGAGTGAAAGCCAATCAGGAAGGAGTAAGTTTTCCAGACTGGATTTCACTCATCTGCAATGTCAGTGTATTTGAATGAAGTATGAGTTACACCTGTACACGTTTCCTTCTTTTCAGGATGCCTTTGCTCCTCCTCTTACTCTGTTTCTCATACATGTGCTTTCCTTTCCGGACTCTGGTTCAGTTTTAACTGGACTGAGAACTTCCATGATAAAAGAGAAATATTTATCCTTGTTCAGATGACAACGGTACAGTTTTTGTGTACTGTTTCATCATTACTGTGGCTGCTTCCTCTCCATCTCTAAATCggtttttaacagaaaaaagggcacacacacacactattagtAATTCACGATAGGTTAAAGTTCtgtactgtaatatactgtattgaCAAGGTAGCTGCTGCTCCATATTAATGTTCAACCATCAGTTCTCTTTGCTGAATATACAATCACACTGTCTGTTAACTGTAACCTGAGTTTATTGTGCcttgtgattgttttttttttttgttttttgcagtttataaAAATTCTTTACGTACAGTAGGACCTTTTTTAATAGAGTTGTTTGGTGAAAAATCAAATTATCCGATTTCTTATTTGTACTAAATGCTTTTGATCAGCCAACatatgtattcttttttttttttttagcttggaAAAAGAGATGGTAGGATAATGTTGCCTACAAACACTGGACTTCATCAACTTCTGTACTACCTGCATAAAAACttcaaaacaca

Function

GO:

id name namespace
GO:0021955 central nervous system neuron axonogenesis biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008521 acetyl-CoA transmembrane transporter activity molecular_function

KEGG:

id description
K03372 SLC33A1, ACATN; MFS transporter, PAT family, solute carrier family 33 (acetyl-CoA transportor), member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU218251 lncRNA upstream 134985 27602859 ~ 27627422 (+) True G161080
TU218250 lncRNA upstream 175637 27586529 ~ 27586770 (+) True G161079
TU218231 lncRNA upstream 361220 27400961 ~ 27401187 (+) True G161060
TU218184 lncRNA upstream 423233 27338127 ~ 27339174 (+) False G161017
TU218293 lncRNA downstream 2388 27780854 ~ 27783189 (+) True G161115
TU218294 lncRNA downstream 6566 27785032 ~ 27795643 (+) False c18h3orf33
TU218309 lncRNA downstream 114621 27893087 ~ 27893477 (+) True G161129
TU218351 lncRNA downstream 252147 28030613 ~ 28035195 (+) True LOC111194734
XR_002651201.1 lncRNA downstream 252393 28030859 ~ 28032190 (+) False LOC111194734
XM_007232086.2 mRNA upstream 332626 27423510 ~ 27429781 (+) True ssr3
XM_022679793.1 mRNA upstream 558497 27202494 ~ 27203910 (+) True LOC111194784
XM_007232092.3 mRNA upstream 643143 27109672 ~ 27119264 (+) True ccnl1
XM_007232093.3 mRNA upstream 646805 27109671 ~ 27115602 (+) False ccnl1
XM_022679790.1 mRNA upstream 658813 27092864 ~ 27103594 (+) True LOC103022175
XM_007231545.3 mRNA downstream 6430 27784896 ~ 27796504 (+) True c18h3orf33
XM_022679983.1 mRNA downstream 26597 27805063 ~ 27965690 (+) True plch1
XM_007231544.3 mRNA downstream 190592 27969058 ~ 27977682 (+) True LOC103040346
XM_007231561.2 mRNA downstream 293025 28071491 ~ 28077732 (+) True LOC103045576
XM_022679804.1 mRNA downstream 395144 28173610 ~ 28177986 (+) True LOC107196882
XR_002651269.1 other upstream 645196 27109671 ~ 27117211 (+) False ccnl1
TU218064 other upstream 854780 26905244 ~ 26907627 (+) True G160919
TU217966 other upstream 1007094 26749379 ~ 26755313 (+) False LOC103021732
TU217233 other upstream 3642582 24119129 ~ 24119825 (+) True G160306
TU217011 other upstream 4908326 22853412 ~ 22854081 (+) True G160134
TU218548 other downstream 843662 28622128 ~ 28624785 (+) True G161292
XR_002651275.1 other downstream 967230 28745696 ~ 28759007 (+) False fam219b
TU218604 other downstream 1292354 29070820 ~ 29116795 (+) True G161331
XR_002651288.1 other downstream 3096572 30875038 ~ 30878327 (+) True hmgn2
TU219178 other downstream 3096652 30875118 ~ 30878312 (+) False hmgn2

Expression Profile