RNA id: XM_007232092.3


Basic Information

Item Value
RNA id XM_007232092.3
length 2188
RNA type mRNA
GC content 0.51
exon number 11
gene id ccnl1
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 27109671 ~ 27119264 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGTCGGTGGGTCCGCTCGgtctgttcttctgtctctgcTGAACTCGCGCTAATGGAGGCCACGATGGCTGCGACTCCGGCGACCACCGCCACCCCTAACCCGCTGCCCGGCGGCGACGCGGGGATCCTGATCGGGGACCGGGTTTACTCGGAGGTGTTTCTGACCATCGATAATTCCCTGATCCCGGAGGAGAAGCTCACCCCGACCCCCTCCATGCTGGACGGCCTGGACCTCCACACCGAGACCGACCTCCGCATTCTGGGCTGCGAGCTCATCCAGGCCGCGGGGATCCTGCTGCGACTGCCGCAGGTTGCCATGGCGACGGGGCAAGTCCTATTCCACCGGTTTTTCTACTCCAAGTCGTTTGTGAAGCACAGTTTCGAGATTGTTGCCATGGCCTGTATTAATCTGGCCTCAAAGATTGAAGAAGCCCCACGTCGAATAAGAGATGTCATCAACGTTTTTCATCACTTGAGACAGATCAGAGGCAAAAGGAGTTCAAGTCCATTGATACTTGATCAGAACTACATAAACACGAAAAACCAGGTGATCAAAGCCGAGCGGCGTGTGCTGAAGGAGTTGGGTTTCTGCGTCCATGTGAAACATCCCCACAAGATCATCGTCATGTACCTGCAGGTCCTCGAATGTGAGAAGAATCAAACTTTGGTCCAGACAGCCTGGAACTACATGAATGACAGTCTGCGCACCAATGTGTTTGTGCGGTTTCAAGCGGAGACCATCGCCTGTGCCTGTATATATCTCGCCGCCCGAGCTTTACAGTTTCCTCTTCCATCTCGGCCACACTGGTACCTACTTTTTGGAGCCACAGAGGAGGAGATCAAAGATATCTGTATTACCACCTTGAAGCTCTACACAAGGAAAAAGcCGAACTATGATCAGTTGGAACGCGAGGTTGAGAAGAGGAAGGTGGCTCTGCAGGAAGCTAAGCTGAAAGCTAAGGGGCTGAACCCTGACTGCACACCAGCTCTTTCCACGCTTGGTGGCTTTTCTCCTGGATCCAAGCCATCTTCTCCAATGGTGAAGGCTGATGAGAAGTCTCCAAACCCTCAGATTGTGAAGACTGTGAAGAAAGAAGCTGAGGATCGGTCCCAGGGCTCTAAGAGTCCTCATAATGGGCTAAGAAAAGAAAGTAAACTGGGTCGTAACAGTAGAAGTGGGAGCCGATCTCGTTCCAGAACTCGATCACGGTCCAGGTCACGCTCTCCAAGACGACATTACAACAACCGGCGCAGTCGTTCAGGGTCCTACAGCTCCCGCTCCCGTAGCCACTCGCACAGCCGCAGCCCGTCACCGAGGCGGCATACCAACCACGgccccccctcccctctcctGCCGCACCTGAAGTCCAAGCAGCGCTCGGATGATAAGGTCCACAGTCGCCACAGCCACAAGAGGAAGCGCTCGCGCTCTGGCAGCAAACCGCGAGGGGAGCGCGAGAGGGAAcgggacagagagagggagcgggACCGCGCCTCGTCTGACCTGAGCTCCAAAAAGCATCGGCACGAACGAGGTGGTGGCAGCGGGGGTCACCACAGGGACCGCCGGGAACGGTCACGCTCATACGAGCGATCACACAAGAGCAAACACCACAGCAGCAGCCACTCGAGCCACAGCCGCCATCGACGCTGAGAAACGCAAGCAAAGCTGtctgagtgaatgaatgaatgcaagTTCGTCTGGCTATGTGCGTCGAGCGGGTCAGAGTTTAACGCCAGATCTGACCACAATCTCcctcattttacattttatttgtttttttgttttgtttgttttttggtaaaTCTTTTAGTTCAAATGTAAAGTGAAGGACTTGAAATacatatttacagtgtaaagaGATTAAATGCTGACATGTTGCAAAGAATGCTTTGATTTATAAAAGCATCATTTTGTTGAAGTGTTTGGGGAGGGGGGAAGTGaataatttaaacaattatttcaGGAAAGACTTCAAGACTTTGCACGGGTATAGCTATATTTACAGAACGTGTTTCCTCTACAGACAAAGAACACGATTTCCCAAGGAATAgaccatatttttttacagcaggaTGCAGACTTTTTTTCTTCAATCGTGGTGACTTTGTTACACTGGTTTTAGTCTGCACGTGTTCACGTTGGATTTTTACTCAATAAAAGGAAAAACTGACTTATTCTTACTGTA

Function

GO: NA

KEGG:

id description
K23966 CCNL; cyclin L

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU218066 lncRNA upstream 192027 26917268 ~ 26917645 (+) True G160921
TU218058 lncRNA upstream 243265 26866125 ~ 26866407 (+) True G160913
TU218005 lncRNA upstream 295603 26769564 ~ 26814069 (+) True G160869
TU217985 lncRNA upstream 534398 26568928 ~ 26575274 (+) True G160851
TU217928 lncRNA upstream 669301 26434639 ~ 26440371 (+) True G160807
TU218156 lncRNA downstream 52379 27171643 ~ 27171938 (+) True G160993
TU218157 lncRNA downstream 53780 27173044 ~ 27173343 (+) True G160994
XR_002651270.1 lncRNA downstream 116593 27235857 ~ 27236813 (+) True LOC111194785
TU218183 lncRNA downstream 218863 27338127 ~ 27339174 (+) True G161017
TU218184 lncRNA downstream 218863 27338127 ~ 27339174 (+) False G161017
XM_022679791.1 mRNA upstream 6078 27088875 ~ 27103594 (+) False LOC103022175
XM_007232094.3 mRNA upstream 6078 27088875 ~ 27103594 (+) False LOC103022175
XM_022679790.1 mRNA upstream 6078 27092864 ~ 27103594 (+) True LOC103022175
XM_022679788.1 mRNA upstream 57473 26853880 ~ 27052199 (+) True veph1
XM_022679793.1 mRNA downstream 83230 27202494 ~ 27203910 (+) True LOC111194784
XM_007232086.2 mRNA downstream 304246 27423510 ~ 27429781 (+) True ssr3
XM_015600826.2 mRNA downstream 643127 27762391 ~ 27778466 (+) False slc33a1
XM_007231546.3 mRNA downstream 643143 27762407 ~ 27778466 (+) True slc33a1
XM_007231545.3 mRNA downstream 665632 27784896 ~ 27796504 (+) True c18h3orf33
TU218064 other upstream 202045 26905244 ~ 26907627 (+) True G160919
TU217966 other upstream 354359 26749379 ~ 26755313 (+) False LOC103021732
TU217233 other upstream 2989847 24119129 ~ 24119825 (+) True G160306
TU217011 other upstream 4255591 22853412 ~ 22854081 (+) True G160134
XR_002651264.1 other upstream 4486365 22622839 ~ 22623307 (+) True LOC111194779
TU218548 other downstream 1502864 28622128 ~ 28624785 (+) True G161292
XR_002651275.1 other downstream 1626432 28745696 ~ 28759007 (+) False fam219b
TU218604 other downstream 1951556 29070820 ~ 29116795 (+) True G161331
XR_002651288.1 other downstream 3755774 30875038 ~ 30878327 (+) True hmgn2
TU219178 other downstream 3755854 30875118 ~ 30878312 (+) False hmgn2

Expression Profile