RNA id: XM_007232093.3


Basic Information

Item Value
RNA id XM_007232093.3
length 2162
RNA type mRNA
GC content 0.46
exon number 6
gene id ccnl1
representative False

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 27109671 ~ 27119264 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGGTCGGTGGGTCCGCTCGgtctgttcttctgtctctgcTGAACTCGCGCTAATGGAGGCCACGATGGCTGCGACTCCGGCGACCACCGCCACCCCTAACCCGCTGCCCGGCGGCGACGCGGGGATCCTGATCGGGGACCGGGTTTACTCGGAGGTGTTTCTGACCATCGATAATTCCCTGATCCCGGAGGAGAAGCTCACCCCGACCCCCTCCATGCTGGACGGCCTGGACCTCCACACCGAGACCGACCTCCGCATTCTGGGCTGCGAGCTCATCCAGGCCGCGGGGATCCTGCTGCGACTGCCGCAGGTTGCCATGGCGACGGGGCAAGTCCTATTCCACCGGTTTTTCTACTCCAAGTCGTTTGTGAAGCACAGTTTCGAGATTGTTGCCATGGCCTGTATTAATCTGGCCTCAAAGATTGAAGAAGCCCCACGTCGAATAAGAGATGTCATCAACGTTTTTCATCACTTGAGACAGATCAGAGGCAAAAGGAGTTCAAGTCCATTGATACTTGATCAGAACTACATAAACACGAAAAACCAGGTGATCAAAGCCGAGCGGCGTGTGCTGAAGGAGTTGGGTTTCTGCGTCCATGTGAAACATCCCCACAAGATCATCGTCATGTACCTGCAGGTCCTCGAATGTGAGAAGAATCAAACTTTGGTCCAGACAGCCTGGGTAGTCCATGATGGTAAGTGTCATAAAGAACCTCTGAACTCTGCTCCTTCAACCACATGACCCCAGGAATCTCCCCCCATTGGCTGCCCGTTTCGAGACGGCCAATCCAGTGAGAGCTCTCTGCCCGAGAATCACTGAAGGGGGGCCTTTCCATCTGGCAACATCATCTTGTTTTCTTGGGGTTGTCCAAAAGGATttgtattttgttacattttattttttgtctgaaCTTCTGAAGTTTTGAAATAAATGCTAGCacagattattttttcttttatttttttatatattaagcaCACTTTACCACTTAAGCAAGTAGATATTCTGCAgtaaaagtgctgttttaagagtgtatgtattttcttatatcattttttttctattattactatttatttattgtccCCCTTAAATAGtcatgtgtgcttgtgtgttcaCACTGATGTGGTTTCTAGAATTGTCTTCCAGGGATCGCCATCCTGCTCAGGCTTTGCCTCCAaggatccatttttttttcggCTATTCCCTTTTCTGTGTTGATCAATTCTAAATGACGAGTAGGAAATCAGGCTTCTACATTTAAGCAAGCAGCTTTAATTAAGtatatgttttaaagtaaatcatCATCAGTGTAGTGTTACTATGCTTCCTGTTTTTTGATCTATTGGATTGTCAATGATAAATGCATCATTGTGCATCACTCCCACCACCCATCTGTCCCTGTGTCTGTTCAGAACACTTCGTAACCAATCTCTAGCAGTTTTAGAACTCCATGCCTAAGACTACCCATTCAGTCAATCAGTCTGTCTATGTTTTTCTGTCTGGTAGTCCGAGCTTAACTTTGACTCAGTCCTGCGCTGCTTTGGGACACGTTAGTCTATGCTCTGGtggttgctgctgctggtgctctCTTAGTTTTTAGTCTCTTGCTTTTGGCTCTCGTTTCCCCAGCAGACAGTGCATGCCTGATGCTGCGTGTCAAGTTGCATGCCATCATCTGTGTTCCTGTCCTTTGTCCTGTGAAGCCTGGAGACCCCTGTGTTGCTCTAGTCCCCCTCCACCTCATTTCACTTCACAGAGGACCATGCCATTTGCTTACGGCAATGGAAAGTCAATCTATCGTTGGCTTGGTGGCGCAGTCTCTTGCTTCTTGCAGGTCAGGCAAAAACGGGCGAGATTAGATGCTTGCAGCAGCAATGCAACTCCAGAACATACAACCTGTTTTGTTATGAACACGTTGTAGTAGTGActgtgtttctctttctttagttTTCTTGCATGTGATGCTGTAATAGGTCagaatagtttttatttttggaccTCATTTCCCTGATGACCCACGCAGGCTTGTTTGTTGTGTACATGTTCAGAACTCCAATGAACCATTCCAGTGTGAACACTCCCTCCATCTGTTCTGCATGTAATCTCTGTACACGGCAAATGTGGAGGCTTCCAGGAGTAAAGAGAGTGAAAGGAAAGA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity biological_process
GO:0006396 RNA processing biological_process
GO:0005634 nucleus cellular_component
GO:0019901 protein kinase binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU218066 lncRNA upstream 192026 26917268 ~ 26917645 (+) True G160921
TU218058 lncRNA upstream 243264 26866125 ~ 26866407 (+) True G160913
TU218005 lncRNA upstream 295602 26769564 ~ 26814069 (+) True G160869
TU217985 lncRNA upstream 534397 26568928 ~ 26575274 (+) True G160851
TU217928 lncRNA upstream 669300 26434639 ~ 26440371 (+) True G160807
TU218156 lncRNA downstream 56041 27171643 ~ 27171938 (+) True G160993
TU218157 lncRNA downstream 57442 27173044 ~ 27173343 (+) True G160994
XR_002651270.1 lncRNA downstream 120255 27235857 ~ 27236813 (+) True LOC111194785
TU218183 lncRNA downstream 222525 27338127 ~ 27339174 (+) True G161017
TU218184 lncRNA downstream 222525 27338127 ~ 27339174 (+) False G161017
XM_022679791.1 mRNA upstream 6077 27088875 ~ 27103594 (+) False LOC103022175
XM_007232094.3 mRNA upstream 6077 27088875 ~ 27103594 (+) False LOC103022175
XM_022679790.1 mRNA upstream 6077 27092864 ~ 27103594 (+) True LOC103022175
XM_022679788.1 mRNA upstream 57472 26853880 ~ 27052199 (+) True veph1
XM_022679789.1 mRNA upstream 57472 26864559 ~ 27052199 (+) False veph1
XM_022679793.1 mRNA downstream 86892 27202494 ~ 27203910 (+) True LOC111194784
XM_007232086.2 mRNA downstream 307908 27423510 ~ 27429781 (+) True ssr3
XM_015600826.2 mRNA downstream 646789 27762391 ~ 27778466 (+) False slc33a1
XM_007231546.3 mRNA downstream 646805 27762407 ~ 27778466 (+) True slc33a1
XM_007231545.3 mRNA downstream 669294 27784896 ~ 27796504 (+) True c18h3orf33
TU218064 other upstream 202044 26905244 ~ 26907627 (+) True G160919
TU217966 other upstream 354358 26749379 ~ 26755313 (+) False LOC103021732
TU217233 other upstream 2989846 24119129 ~ 24119825 (+) True G160306
TU217011 other upstream 4255590 22853412 ~ 22854081 (+) True G160134
XR_002651264.1 other upstream 4486364 22622839 ~ 22623307 (+) True LOC111194779
TU218548 other downstream 1506526 28622128 ~ 28624785 (+) True G161292
XR_002651275.1 other downstream 1630094 28745696 ~ 28759007 (+) False fam219b
TU218604 other downstream 1955218 29070820 ~ 29116795 (+) True G161331
XR_002651288.1 other downstream 3759436 30875038 ~ 30878327 (+) True hmgn2
TU219178 other downstream 3759516 30875118 ~ 30878312 (+) False hmgn2

Expression Profile