RNA id: XM_007233718.3


Basic Information

Item Value
RNA id XM_007233718.3
length 5617
RNA type mRNA
GC content 0.50
exon number 11
gene id LOC103040053
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 32782074 ~ 32879256 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCGTGCGGGGATTGGAATGCAACGCGGAGACAAACAGAGCTACCGAGGCGCGTTCACGCATTTCCCCCCGGTCCGGAGTTCAGGGACGGGGTTCGGCCCGGTACCGAGGCTCGGGTTGGGTTCCGTAGCGCGTGGAACAGTGCTGGGAGTAGTTGTGGCGCGCGGGGCTCCGCTCGGAGAGGCGGGGGAGTCCGCGGTTCAGCGCGGGGAGAGAGAGTGTCGTTAGCCGCCTGAGCTCCACTCAAACTCCCGTACCGAGAGCTCCGCTTCACCGCGCCGGGAAATGCAGGGATTTGTTCGGCTGCCGCTTGTTTATCGCGCTCCCCGCGACGTTATGAGCGCGGAGGATGTTGGTATGCCGTAGATAGGAGGTAAGTAGAGGCTTAGACGTTGCCTCAATGTTTTGGACGGTGTTAGTTTCCAGTATCTGGCCCGTGAGAACCTGCTGAGGAACGTTTAAGACCAGGATTAGACGGTTCTAAGGGAACTTAACGGTCTACTGAGGACTACTTTCTGAGAGACTCTACAGCAACAATAGAGCACTctattaaacacaaatacaaacacgttttacaaatgtttttagGCTCTAGGAGATGTTGGACTAGGATCTTAAGCTGAGTTTCAAGTTCCCGGTCTGAAAGAACCTGCTGAAGTACCCCTGAGGAGACCAGGATGAGACATTTCTGAGGATAGTTTGTACCAGACgttttacaaatgtttttagGTTCTGGAAGATGTTGGACTAAGATCTTGAGCTGAGTTTTAAATTCCTGGCCAGAAGAACATTTAAGAGCAGGATTAGACGGTTCTGAGGGAACTTAACGTTCTACTAAGGATTACTTTCTGAGAGACTCTCCATCAACAATAGAGCAttctaacaaacacacacacgtttaataaatgtttttgggCTCATGAAGATGTTGGGTTAAGATCTTGAGATGAGTTTTAAGTTCCCGGCCTGTAGAACACCACCTAAGAAGACCAGGATGAGACATTTATGAGGATAGTAGTTTGTACCGGAGTTGCTTTCTAAGAGAGTGTAGGACTAAGATCTTGAGATAAGTTTCTAGTATCTGTTATTAGATAACTTTCTGAGGAACCATAAGACCAGGATGAGACCTTTTGGAGGTATCTGAGGTAACACTACCTCAGGTACCACACTGAGGCTAGTTTGTACCAGAATTTCTCTTTCATCAACCTTAGAGCACACTAGCTAGcactcacacgcacacagtTCCACACACATGCTTTATTAGTCTTTAAACGGTTTAGGACTAAGATCTTGAGGTGAATTTTCAGTATCTGGCATGAGAGAAGTTCCTGAGCAAGTTATCACTCTCACCAGAATTGCTTTCTGATAGACTCTTGGCTAGATAGAGcgcacacacattttattagacCCTGGGAGTTGGTGTTGGACTGAGATCCTGAGGTCAAAGTCCACTGGAGCACCACAatcaccaccacctcctcctcctcctcctcctgctgctgctgctgctgcttcttcttgCTCCTTCCTGCTGCCCCAATTCCCCTGTTCCCTTGTTTTAATGCTCAAGTGGACAGAGGTAAGTTATATGGTCCACAAAAGTCGCCCACATGCTCTGGCTTGGGGAACGGGCTTGGAAGACCAAGAAGAAGGAGGACGACAAAGAAGACTTTAGAAAACACTTATTGCAGGCTGGGGAAAGATGGCCGCGCTGCCCGGCTTGGGACTGTGAGCCCCAAACTTGGTGGCGAGTCGGATTTCTCGGCCAAGCCCTCAGGGCCGGACCGGAGGACCCATGCAGGCCAAGAAGCGCTACCTGATTCTGGTCTCTGCCGGCACCTGCCTCTTTCTCCTGCTCTGTCTTGGTGGGCTTCCGGTGCCGGCTTCCAGAGGGGGCCTGGGGAGACGGGATGGCCACCGTCCTGGTACCCACTGGCCCCGCTACTCAGAGCACCTGCAGCCTTTTGTTCCTTGGGACCAGTCAGAAAGCGAGGGCTTCAGTGCTCCTATGTCCCCGAGGCAGAAGAGGGATGCCAACTCTGGCTTGTACAAGGGCAGGCGCTGCCGGATGGACTCATGTTTTGACTTTTCTCTTTGTGAAAAGTATGGCTTCAAAGTTTACGTGTACCCTCAGCAAAAGGGGGACAAAATCTCAGAGAGCTACCAGAGCATCCTGGCTTCAATTGAGGCCTCCAGGTTCTATACGTCTGACCCAGGTCAGGCGTGCTTATTCGTGCTGAGCCTGGACACTTTGGACCGGGACCAGCTTTCGCCTCAGTATGTGCACAATTTGAAGGCGAAGGTCCAAAGCTTGAGCCTTTGGAACGGAGGCCGCAACCACCTCATATTTAACCTGTATTCGGGGACATGGCCGGACTACACGGAGGATTTGGGATTTGACATTGGCCAGGCTATGCTGGCAAAGGCGAGCATCAGCACGGAGAACTTTAGGCCTAACTTTGACGTGTCCATTCCTCTTTTTTCTAAAGACCACCCAAGGACCGGAGGGGACAGGGGATATTTAAAGTACAACTCCATCCCCCCTTTTAGGAAATATGTGCTGGTGTTTAAGGGCAAGCGATACTTGACTGGCATCGGGTCGGACACCCGGAATGCCCTGTACCACGTCCACAACTCTGAGGATGTGGTCCTTCTCACAACATGCAAGCATGGAAAAGACTGGCAGAAACACAAGGATGCCCGCTGTGACAAGGACAACGCAGAGTATGACCGATATGACTATAAAGAAATGCTGCACAACTCCACTTTCTGTCTGGTGCCTAGAGGACGCCGCCTGGGCTCCTTCCGCTTCCTCGAGGCTCTGCAGGCTGCCTGTATTCCTGTCATGCTCAGTAACGGCTGGGAGCTTCCCTTCTCGGAGGTCATCGACTGGAACACCGCTGCTGTCATCGGGGACGAGAGGCTGCTtctacagATCCCCTCCACCGTCCGCTCCATACACCAGGACAAGATCCTGTCTCTCCGCCAGCAGACGCAGTTCCTGTGGGAGGCGTACTTCTCTTCTGTGGAGAAGATCGTTCTCACTACACTGGAGATCATCCATGACCGGGTGTTGCAGCACGTCGGGCGCAGCAATCTGATGTGGAACAGCCTCCCCGGGGGTCTCTTCACACTGCCACAGTACTCCTCATACCTGGGACACTTTCCTTTCCATTATGCTCCACTTGGTATCAAACCAAACCCCAAGTTCACAGCAGTGATTCACGCAGTAACACCCCTGGTGTCCCAGTCTCAACCCATCCTCAAGCTGCTAGTGGCCGTGGCCAAATCACAGTACTGTGCCCAGATCATTGTCCTGTGGAACTGTGACAAGCCTCTTCCTGCCAAGCACCGCTGGCCCGCCACGCCTCAGCCGGTCGTCGTGATCGAGGGAGAGAGTAAGGTGATGAGCAGCCGCTTCCTGCCGTACAGCAGCATAGTGACGGACGCTGTGCTGAGCCTGGACGAGGACACGGTGCTCTCCACCACTGAGGTGGATTTTGCCTTCACCGTTTGGCAGAGTTTCCCTGAGCGGATCGTGGGCTACCCGGCTCGGAGCCATTTCTGGGACGCCAACAAGGAGCGGTGGGGCTACACCTCCAAGTGGACCAACGATTATTCAATGGTGCTGACAGGAGCTGCTTTCTACCACAGATACTACAACTACTTGTATACGAATTACCTGCCAGCCAGCCTGAAGAGCATGGTTGACCAGCTATCAAACTGTGAAGATATCCTCATGAACTTCCTCGTGTCTGCTGTCACCAAGATGCCGCCCATCAAGGTCACCCAGAAGAAGCAGTACAAGGAGACCATGATGGGACAGACGTCGAGAGCCTCTCGCTGGGCGGACCCTGACCACTTCGCCCAGCGGCAGACTTGCATGAACAAATTTGCCAGCTGGTTTGGCACCATGCCTCTGGTCCACTCCCAGATGAGGCTGGACCCTGTTCTGTTCAAGGACCAGGTGTCTATACTGCGCAAGAAATACAGAGACATTGAGAGACTCTGATGAAGCGGAGACGCCTCTTCCTCTGAGGAAACGGGAAGGGGAAGTGCAACAAGGGGGCGCCCTGGAGTCTTGCGCCGTGCGTTCGGGGCAAATGGGGCAGTGGATTCCCTTGGGAAGTGAGCCAGCAGGGAGGTGGAGGGTGGGGGAATGGGTGGGGAAAAGGAGTGTGATTGATGTTTGTGCTTGATGTTTAAGTCCTTACTGTCAAAAACTTGTACCTGAACCAATTGAACAGATTTCGATTGGTTTAGTTGAGATTCTTGGGttaagaaatacaaaaatacaaagtcTAATTAGCCTTTTTTCAACATCCAAACCAACAATCTTTACTTTAACCAAAGGAAGAGCACGTAGATTTTACACTACTTTAGATTTTCAGCAAGTTTTTGGCAGTTTGACTGCTGTACACATCAGCACGTCGTCAACGTATAACACAGCAAGTACAACATAGTCTTCCCCCTCTCGAGGAATGCTCTGCCAAAGGCAACACAGGGTCAACCTGACCCAAGCTGTGCCACGCACAGCCGGGTCCTGGACCACAGTTTCAAGCCCCCCCTCCTCCACAACAGCACGAGAACGGTATGCTCAAAATGCTCAAAGACTGAAGGCTTTTGTGGCAGAATGCTGGCAGGCCTATTAAAAGTGGAAACCCGGCACGGTGGGCCGAGCCACACAGAGGTTACCCGCCCGCCGTGCGAGTTTGTTCTGTTCGCCCTCGCTCCTGCTGGCTCCTGCCGGCTCCTGCAAGCAGCACTTCCCTCCCTGAAGTCGCAGGACGGTCGCGTCCTGCCGAGGTGGCTGACAAAGCCTCTCCTACAAAGAACTACAATGTCACAGTGCCTGACCTTTCAAAACCGAGTGCGTCTGGGAGTCCGaagggtttttctttttttttccttttagaaCCCTTGCTCATGCTGCTTGTGTTTTGGTAACATGAACATGAACAAGTCAAAAGAGTTTCTCGGATTTGCCCAAAGCTGTTcatttctttttccttcttcttattggtttccatttattttattttatttttttcgttcTCTCCTCTTCGCTGATCATCTCTGGAATTTTATTTTGGGATTAGCAAGCGGAAAATGTTCTGTTTGCTTTTACAAACCGTTGCTGCCCAGAGAATAACGTATCTTAAAACGTTAAAACATTTCAGTAGTAGGAGCACTTCTATTGATCCATTGATCATGGGATTTGTAGTCAAATTTCAAATGGTGTAGCAaactaaactacaaaaaaagtacaaaaatggagatgcacGTTCTTCTTCGcagcaacaaaataaaaggaCAAAGCGTTCTTTTAGTGGCACCCTGTTAGTTTTCCTTCCAGCCCATCAGAAGCACATGCAATCAGTTGTTTGGAGGCTAACCAGTTGATTTATCAAGTGGAATCAGATGATGTTTAGAATAAAAACCTGCCACAAGTGGATAATGTTGGTTTCCACTGCCACAAAAGAACCATCTTTATATCACAGAAAGAACGGTTTTAAGTGAGCTCTTAATTTGATAAAGAAGTACTGTACCAATTACTTTaccaattaaaaacatgtttaaatgccTCTTTATTGAAaccataaatgtttttttgtttta

Function

GO: NA

KEGG:

id description
K02366 EXT1; glucuronyl/N-acetylglucosaminyl transferase EXT1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219594 lncRNA upstream 34363 32648159 ~ 32747711 (+) True G162097
XR_001518293.2 lncRNA upstream 38067 32742054 ~ 32744007 (+) True LOC107196950
TU219592 lncRNA upstream 38337 32741987 ~ 32743737 (+) False LOC107196950
TU219617 lncRNA upstream 42465 32736429 ~ 32739609 (+) True G162111
TU219613 lncRNA upstream 43919 32736429 ~ 32738155 (+) False G162111
TU219788 lncRNA downstream 288461 33167717 ~ 33168084 (+) False G162239
TU219790 lncRNA downstream 288461 33167717 ~ 33168151 (+) True G162239
TU219801 lncRNA downstream 296874 33176130 ~ 33176329 (+) True G162247
TU219804 lncRNA downstream 317709 33196965 ~ 33197176 (+) True G162250
TU219817 lncRNA downstream 374149 33253405 ~ 33253768 (+) True G162255
XM_007233722.3 mRNA upstream 52223 32721244 ~ 32729851 (+) True LOC103041297
XM_007233723.3 mRNA upstream 80470 32681742 ~ 32701604 (+) True LOC103041596
XM_022679876.1 mRNA upstream 216184 32377101 ~ 32565890 (+) True LOC107196951
XM_022679877.1 mRNA upstream 216184 32377101 ~ 32565890 (+) False LOC107196951
XM_022679871.1 mRNA upstream 979511 31714912 ~ 31802563 (+) False satb1
XM_022679879.1 mRNA downstream 26398 32905654 ~ 32915649 (+) True LOC103039334
XM_022679880.1 mRNA downstream 26398 32905654 ~ 32915649 (+) False LOC103039334
XM_022679881.1 mRNA downstream 38887 32918143 ~ 33043136 (+) True LOC103043655
XM_022679409.1 mRNA downstream 325451 33204707 ~ 33997444 (+) True LOC103027235
XM_022679884.1 mRNA downstream 1191903 34071159 ~ 34092737 (+) True LOC103045871
TU219593 other upstream 62799 32714183 ~ 32719275 (+) True G162096
TU219521 other upstream 487045 32236316 ~ 32295029 (+) True G162032
TU219503 other upstream 633884 32068862 ~ 32148190 (+) True G162017
TU219178 other upstream 1903762 30875118 ~ 30878312 (+) False hmgn2
TU220729 other downstream 3874929 36754185 ~ 36754687 (+) True G162964
TU220936 other downstream 4530736 37409992 ~ 37411969 (+) True G163105

Expression Profile