RNA id: XM_007233723.3


Basic Information

Item Value
RNA id XM_007233723.3
length 3182
RNA type mRNA
GC content 0.53
exon number 11
gene id LOC103041596
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 32681742 ~ 32701604 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCTTCCTTaccaaataatgttttttttttcacataccATATCCAGCAAGACAACATTAATAGTAGCATTCccgaaacaaaaaaatgaactgaaacaaGTGATGCTGctttctaagaacatccagaaaacgtTCTAATAACCAAAAAGTGTTAGCTGGGATAGTAACACCCTCAAAGTGTATAAATGTGAAATTGCTGAAATAGTTCAATTCAGTTTTAACCCTCAGTTTTAATGCACTTATGGTCCACTTATACTttcgttaaaaaaaacaacgaaCACTGAAGTCTACGAACTGGTCAAAaccggacacacacacacacacacacacacaatcctatTCTTTTCTACACAGTGGCAGGAAGTCGTCCAGATTTCCGCTGTGCTTCTGAAACAGAACGATAGAGCAGGGAGGGTGGGTGTTGATGGTGGTGGGGGTAATGTTGGGGGTGTAGACGTGATGTAGACATAACTGCTGAAACTGTTCAGGGCACTTCCATAAAGGAGCTATAGGAGAGAGCAGACCTACAGGCTGAAACCCTACACACTGTGGTCTGGAGGAAAAAGGTCCAGCACACCTCAGAAGATCAGCCGGGGTCAGCGGGTCACTCAGAGGATTCCTGTGGGTCACACTGTAGAGAGGAGATGGTCCTGATGGTGACTCTGATCTTCATCCTGTTCACCACAGCAGGTCAAGCCTCTCCCAGTGACCCGTGGAGCAGCTGCCCAGTGGATAAGATGTGTAAGAACAAGTTTGCAGACGGAGAGTGTGATAAGGAGTGCTCTGGATCTCAGTGCCTGAGAGACGGCTTCGACTGTCTGAAAGATAAAGTGTCCTGCAATTTAGGCTACCTTCTTTACTGTCGTGACCATTACGACAACACCCACTGTGAGAACAGCTGCAACACTGCCTCCTGTGGGTGGGATGGCTCAGACTGCTATAAGAACCACCGCACCAACTGGGCCAAAGGGGCGTTGGTCCTGCAGACCAGCATCCCCTTCCAGAAGGGACCCTTCCAGAACAGCTCTTTACTGTGGGCTCTCAGCATCCTGCTCCAGACCAGCGTGAAGCTCAGGGGGATGGTGCCCTTCCAGCCCAACGGTGACCTGTCCAGTCTGGACGCTCAGCAGCTGGTAGAGCTGCACAGACAAGCACCTGCTTATGAGAGCAACGGGTCTCTATTGTTTCTTCAAGTGGACAACCGGCCGTGTACTCGCCTGCCCTTCACCTGCTTCCCGTACGCCATCGAGGCGGCGGACTTCCTGAATGCTGTGGTGCAGCTAGGCCGAGCCCCAGCCCACGTCAAACCCGAAATCCAAACTCTCATCAGCATCCGGGGCATCGAGAAGGAGATCACAGTAAAAGAGACTGCAGCTGAGGAGCTAGGTGTGAATGATAATGGCTCTCCCGCCTGGCTGTGGCCTGTGGTTGGCGTAGCGACAGGTGTAATCGTGGCTCTGGCAGTGGTTGGCATGGTGCTGGTGTGGttgagaaggaggagaagaagaagagagggaggagagagagttCGTCACCGGTCCACCGCCACGGAAAACAACAACGGCAGTAAAGCCTGGAGCCAGCGTTCAGCCGACCAGCACCAGGGCAGGGGCCGGTCAGGCAGAGAGAAGGACAGGAACGgcatgaagaagaagaagaaagggaaGGAGCTGGGGAAGAAGAGGAGGGAGCCGCTGGGAGAGGACGCCATACGAATGCGGCCACTTAGGAAGGACCTGGACATCGGCAGTGACACGGACGTGACCCAGAGCTCCATGGAGGACATCAACAGAACGATCTGTGACCACAGGTCTCCAGTGCAGAAACACTACGGCATCAATCACCAGCAGCAATCTCCCGTACCAGTACCGCCAAGACGGTGGGACAGGAACACCCCGCCCACTCAACAGCGAATCCCCAGCAACCCAGCTCCAGTGCAGTGGTGTGGTCCCGATGGCTCTGTGGTGCTGATCCGTGCCGTGAGGAGTGGACTGGACCGGGTGGTGCTGGAGCTTCTGAGGGCTGGCGTGCCAGTCAACAACACTGACCACACCGGGAGGTCTGCCCTGCACTGGGCATGCTCAGTAAATCACCTCTCATTGGCTCGGACGCTGATTCGCTACGGTGCCCTGGTGGATCTACAGGATCACAAGGGCGAGACAGCTCTCTTCCTCTCCGCCCTTCACGGTTGCTACGAGACTGCCAGATTCCTCCTCCTAAACGGGGCCAATCAGGAGCTGACTGACCGCAGAGGAAGAAGGCCTATGGATGTGGCCCGAGAGGGGATGCATCACCAGGTTCTTGAGCTCCTATTGGCCCACAGAATCCACCGCAGTCCGTTTCCAATGGACCCAGCCACTGAGGTGCTGTGGGATGACCGTGCCTACCTGTATTCTTCATGGGTGGCAACATCTCCCTGTCTTCCTGGAAGAAGTGCCTCCTTTTCTGGGGTTATAGCACCCCGAGACATGTCTTCACCTCCACCCAGCGACTGGCAAATGGTCAGAGGGCAGTGCGCCTCACCCCAAAACTGGCGGCCCCCAGCCAACCAATCAGCCACCGCTCTGGTCAGTCCCAGAATCCTCGGCCGCCCTTCGAGGCCAATCAGCACACTTCAGGAGGTCACTTCAGAAGcagaggaagaagagagagaagcagcTCAGGAAGTCCCGCGGCCCATAACACCTCACTTCCTGTCTCCCCAGCCGGCACCCAGGCAGCGCTCCTTCTCCTGCACCCAGCCCGCCCTGCAGCGCCGGTTCAGCGGAAACCAGCCCGAGCTGTGTGCCCCTGCCCTACCAGAGAAACAAGCCAAAGAACACGTGGAGATAGTGGTCGTGCCCCATCCTAAACCAAACATCAGCCAAGCAGAGGGTAAAACACCGGGGACAGGGGCCAGCCCTGCTCAGACAGACCCGGAGAAAGACAACAGGAGGAGCGGTGAACCAAAAAACCCAACTGAGACGATCAGTAATGACCCCACATCAATCCAGACTGTGATGTGAAAGATATACAGGCACATATGGGCTGATTCCAGAAAAAGGACTGTTTTatgcattaaaatgttaataaatactgtatgttgccactctttttgtaaaaatgctgtaaatcaTTTTTGCTTGCTTGCTTCCTTTTACCAAATGGTAAAATCACAAACCAATAAACTTAACGTTTTCTTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219598 lncRNA upstream 26577 32652026 ~ 32655165 (+) False G162099
TU219596 lncRNA upstream 27007 32652026 ~ 32654735 (+) True G162099
TU219582 lncRNA upstream 46253 32633971 ~ 32635489 (+) True G162087
TU219536 lncRNA upstream 66273 32613718 ~ 32615469 (+) True G162046
TU219533 lncRNA upstream 101974 32577270 ~ 32579768 (+) True G162043
TU219613 lncRNA downstream 34825 32736429 ~ 32738155 (+) False G162111
TU219617 lncRNA downstream 34825 32736429 ~ 32739609 (+) True G162111
TU219610 lncRNA downstream 35686 32737290 ~ 32738155 (+) False G162111
TU219612 lncRNA downstream 35686 32737290 ~ 32738155 (+) False G162111
TU219592 lncRNA downstream 40383 32741987 ~ 32743737 (+) False LOC107196950
XM_022679876.1 mRNA upstream 115852 32377101 ~ 32565890 (+) True LOC107196951
XM_022679877.1 mRNA upstream 115852 32377101 ~ 32565890 (+) False LOC107196951
XM_022679869.1 mRNA upstream 879179 31714912 ~ 31802563 (+) False satb1
XM_007233722.3 mRNA downstream 19640 32721244 ~ 32729851 (+) True LOC103041297
XM_007233718.3 mRNA downstream 80470 32782074 ~ 32879256 (+) True LOC103040053
XM_022679879.1 mRNA downstream 204050 32905654 ~ 32915649 (+) True LOC103039334
XM_022679880.1 mRNA downstream 204050 32905654 ~ 32915649 (+) False LOC103039334
XM_022679881.1 mRNA downstream 216539 32918143 ~ 33043136 (+) True LOC103043655
TU219521 other upstream 386713 32236316 ~ 32295029 (+) True G162032
TU219503 other upstream 533552 32068862 ~ 32148190 (+) True G162017
XR_002651288.1 other upstream 1803415 30875038 ~ 30878327 (+) True hmgn2
TU219593 other downstream 12579 32714183 ~ 32719275 (+) True G162096
TU220729 other downstream 4052581 36754185 ~ 36754687 (+) True G162964
TU220936 other downstream 4708388 37409992 ~ 37411969 (+) True G163105

Expression Profile