Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_007233834.3 |
| length | 1273 |
| RNA type | mRNA |
| GC content | 0.47 |
| exon number | 10 |
| gene id | prpf18 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_035914.1 |
| NCBI id | CM008317.1 |
| chromosome length | 41377133 |
| location | 8555188 ~ 8565498 (+) |
| genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
| species | mexican tetra (Astyanax mexicanus) |
| id | name | namespace |
|---|---|---|
| GO:0006397 | mRNA processing | biological_process |
| GO:0008380 | RNA splicing | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU212918 | lncRNA | upstream | 116919 | 8432614 ~ 8438269 (+) | True | G157027 |
| TU212912 | lncRNA | upstream | 193438 | 8361520 ~ 8361750 (+) | True | G157022 |
| TU212909 | lncRNA | upstream | 198111 | 8356218 ~ 8357077 (+) | True | G157019 |
| TU212780 | lncRNA | upstream | 694548 | 7846615 ~ 7860640 (+) | True | G156917 |
| XR_001518589.2 | lncRNA | upstream | 705310 | 7846483 ~ 7849878 (+) | True | LOC107197493 |
| TU212945 | lncRNA | downstream | 931 | 8566429 ~ 8567668 (+) | True | G157052 |
| TU212947 | lncRNA | downstream | 2746 | 8568244 ~ 8568463 (+) | True | G157054 |
| TU212961 | lncRNA | downstream | 38091 | 8603589 ~ 8608021 (+) | True | G157064 |
| TU212966 | lncRNA | downstream | 115311 | 8680809 ~ 8683103 (+) | True | G157069 |
| TU213140 | lncRNA | downstream | 326592 | 8892090 ~ 8894941 (+) | True | G157210 |
| XM_007233844.3 | mRNA | upstream | 22021 | 8520018 ~ 8533167 (+) | True | cpt1b |
| XM_022679553.1 | mRNA | upstream | 41757 | 8508404 ~ 8513431 (+) | True | LOC103026556 |
| XM_015601452.2 | mRNA | upstream | 41757 | 8509135 ~ 8513431 (+) | False | LOC103026556 |
| XM_022679552.1 | mRNA | upstream | 47693 | 8494840 ~ 8507495 (+) | True | chkb |
| XM_022679569.1 | mRNA | downstream | 254604 | 8820102 ~ 8826458 (+) | True | LOC111194761 |
| XM_022679407.1 | mRNA | downstream | 265931 | 8831429 ~ 8836613 (+) | True | LOC103043520 |
| XM_007250928.3 | mRNA | downstream | 279478 | 8844976 ~ 8871398 (+) | False | LOC103030146 |
| XM_007250927.3 | mRNA | downstream | 279479 | 8844977 ~ 8871398 (+) | False | LOC103030146 |
| XM_007250929.3 | mRNA | downstream | 282060 | 8847558 ~ 8871398 (+) | True | LOC103030146 |
| TU212659 | other | upstream | 948520 | 7600567 ~ 7606668 (+) | True | G156840 |
| TU212485 | other | upstream | 1123620 | 7372376 ~ 7431568 (+) | False | LOC111194759 |
| TU212490 | other | upstream | 1150632 | 7387502 ~ 7404556 (+) | False | LOC111194759 |
| TU211750 | other | upstream | 3397788 | 5157154 ~ 5157400 (+) | True | G156188 |
| TU211262 | other | upstream | 5800076 | 2738361 ~ 2755112 (+) | True | G155776 |
| TU212948 | other | downstream | 4432 | 8569930 ~ 8570877 (+) | True | G157055 |
| TU213377 | other | downstream | 1375331 | 9940829 ~ 9941805 (+) | True | G157383 |
| TU213920 | other | downstream | 3796953 | 12362451 ~ 12366770 (+) | False | LOC103031933 |
| TU214078 | other | downstream | 4170134 | 12735632 ~ 12740999 (+) | False | hsbp1 |
| TU214177 | other | downstream | 5168447 | 13733945 ~ 13736102 (+) | True | LOC107197649 |
