RNA id: XM_007233845.3


Basic Information

Item Value
RNA id XM_007233845.3
length 1789
RNA type mRNA
GC content 0.50
exon number 9
gene id pgc
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 8466873 ~ 8474471 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAGTCCATCTATCAGCATTGTGCCTTATCGGTGTTATCAGAAGAAAGTAAGGGAGCGTGGCAAATGTTTTTATAGGCTTACAGCCATCAGAGAATAAAGTGCTGGCTCAGGTAAAAGcgtctgtgtgtgcatgtttctAACAGAGAGATATGAAGCTCTTGGCTTGGGTATATAAAGGCCATGCTGTCTGAAGGGCCGATGTGTTCATTCAGCTAGACGGAGCACAGGAAGCACAATGAAGTGTCTGGTTCTACTCGTGGCATGCCTGGTCCTCTCTGAGGCCGCCATCAGGGTTCCCCTGAGGAAGATGAAGTCCATCAGACAGGCTCTGAGGGAGAAGGGAATTCATCTGCCCTACAGTGACCCCGGCCTGAAATACCAGCCTCTTGAGGTCCTGGCCACCTCCACCATCGAGCCCATGACCAACTACGCTGACAGCTCCTACTATGGTGTGATCAGTGTTGGCACTCCTCCCCAGTCCTTCCAAGTTCTGTTCGACACAGGCTCTTCCAATCTGTGGGTCGACTCTGTCTACTGCAGCACCCAGGCCTGCACCACTCATACCCAGTTCAACCCCAACGATTCCTCCACCTACCAGTCCACCTCTACTACCTTCTACCTGCCCTATGGAGCTGGATCTCTCGATGGCGTCTTTGGTTATGACACTGTCACTATTTCTGGCGTCACCATCACTGGTCAGGAAATCGGTCTGAGCACCAACGAGCCTGGTCAGAACTTTGTGGTGGCTCAGTTCTCTGGAATCCTTGGTCTGGCCTACCCATCCATTGCTGCCGGCGGACAGACACCCGTCGTGGACAACATGATTAATCAGGGTCTCCTTGAGTACAACTTGTTCGGTGTCTACCTGAGCCCGAATGAAGAGTCTGGAAGTGAGATTGCTTTCGGTAACGTGGACACCAACATGTACCAGGGTCAGATCTACTGGACACCAGTGACCTCTGAGACCTACTGGCAGATTGGCATTCAAGAGTTTGCCATTGGTGGACAGCAGACTGGCTGGTGCTCTCAGTCCAGCGGCTGCCAGGCTATTGTGGACACTGGAACCTCTGCTCTTACTGCCCCCCAGTCTTACCTGGCCAGTCTGATGCAGTCTATTGGAGCAACTCAGGACAGTTATGGAGGGTATTACGTGTCCTGTAGCGAGGTAAGCAACCTCCCCACTCTGACCTTCACCATCAGCGGAACCAACTTCCCTCTGCCTCCCTCCGCCTACATCCAGGAGAACCAGAGCGGCTACTGCACCGTGAACATCACCCCCACCTACCTGCCCTCCCAGAACGGCCAGCCCCTCTGGATCTTCGGAGACGTGTTCCTCAGGGTGTACTACTCTGTGTACGACCGCGCCAACAACCAAGTGGGCTTTGCCACCGCTGCATAAACACCACCAGCACCATACTCCTAACAGCTCAAACACTTCACACATTTCACCCACTTCTCTAACAAAAGCTACAGCCTCCCTCGCAACATCAATAATACTCGCAGCTAATTGCATTAACATCGGAACATCTTTGTTCGTAGGCTGTGCCAAGCCCAGAAAAACAACCTCTGGCAGTTTAATGaacttcctgttttttttttttctcagattggCGCTGTTAGTTTTAGACAAACTCAATAATGAGCTCTAAttgaaatgtatatttaaacacaaattcCCCATTCAAAGTGTTGAAACAATGTTTCATTGACTGTTTATTGGAGCATTAAGacaataaataagaataaagagcAAACTGTGCTGTCTCTTGTTTTGATttcacatgattaa

Function

GO: NA

KEGG:

id description
K01377 PGC; gastricsin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212918 lncRNA upstream 28604 8432614 ~ 8438269 (+) True G157027
TU212912 lncRNA upstream 105123 8361520 ~ 8361750 (+) True G157022
TU212909 lncRNA upstream 109796 8356218 ~ 8357077 (+) True G157019
TU212780 lncRNA upstream 606233 7846615 ~ 7860640 (+) True G156917
XR_001518589.2 lncRNA upstream 616995 7846483 ~ 7849878 (+) True LOC107197493
TU212945 lncRNA downstream 91958 8566429 ~ 8567668 (+) True G157052
TU212947 lncRNA downstream 93773 8568244 ~ 8568463 (+) True G157054
TU212961 lncRNA downstream 129118 8603589 ~ 8608021 (+) True G157064
TU212966 lncRNA downstream 206338 8680809 ~ 8683103 (+) True G157069
TU213140 lncRNA downstream 417619 8892090 ~ 8894941 (+) True G157210
XM_007233848.3 mRNA upstream 34820 8423666 ~ 8432053 (+) True arsa
XM_022679551.1 mRNA upstream 165093 8291162 ~ 8301780 (+) True LOC103028908
XM_022679549.1 mRNA upstream 585913 7875024 ~ 7880960 (+) True rabl2b
XM_007244087.3 mRNA upstream 600295 7862072 ~ 7866578 (+) True odf3b
XM_015604460.2 mRNA upstream 606363 7851925 ~ 7860510 (+) True LOC103032733
XM_022679552.1 mRNA downstream 20369 8494840 ~ 8507495 (+) True chkb
XM_007233841.3 mRNA downstream 20370 8494841 ~ 8507495 (+) False chkb
XM_022679553.1 mRNA downstream 33933 8508404 ~ 8513431 (+) True LOC103026556
XM_015601452.2 mRNA downstream 34664 8509135 ~ 8513431 (+) False LOC103026556
XM_007233844.3 mRNA downstream 45547 8520018 ~ 8533167 (+) True cpt1b
TU212659 other upstream 860205 7600567 ~ 7606668 (+) True G156840
TU212485 other upstream 1035305 7372376 ~ 7431568 (+) False LOC111194759
TU212490 other upstream 1062317 7387502 ~ 7404556 (+) False LOC111194759
TU211750 other upstream 3309473 5157154 ~ 5157400 (+) True G156188
TU211262 other upstream 5711761 2738361 ~ 2755112 (+) True G155776
TU212948 other downstream 95459 8569930 ~ 8570877 (+) True G157055
TU213377 other downstream 1466358 9940829 ~ 9941805 (+) True G157383
TU213920 other downstream 3887980 12362451 ~ 12366770 (+) False LOC103031933
TU214078 other downstream 4261161 12735632 ~ 12740999 (+) False hsbp1
TU214177 other downstream 5259474 13733945 ~ 13736102 (+) True LOC107197649

Expression Profile