RNA id: XM_007235656.3


Basic Information

Item Value
RNA id XM_007235656.3
length 7634
RNA type mRNA
GC content 0.53
exon number 15
gene id bicra
representative False

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 25549428 ~ 25564612 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCCCCCCGGTCCCGGACTGTTCCCACATAAACTCAGCTTTAGCTCCGAGGATAAAGATACCAGGGTGCGCAGCTCGCCTCGGCCCGCCGAATCCACAGCGCCGCGGTCCGAGCTCCGTGTGGGCCTCGCGGGGCGGCCGTGTAACACACGTACACGCAGGCGGGTCCAGTTATTGTAGTCAGATTTATCTGCTGCGTCTGAACCTGGTAGCAGCGCCGAACTGCCTTTGCtgctgctaacagtgctaacaggctacagctgctgctgctagtgctAACTGGAACCGCTGCAGAACCGCGAGCGAGGAGAAACCCCGCGCCCTGCGAACCCGCCTCTCCACCGGCAGCTCTCCCCCGGTTCCCCGGGCCGAGCGGAGCGCTCCCCGCGGGCCGCTGTTTCGGCGCTGTTTCTAGCGGAGTTGTGGTTCCGCACATAGCTAAACCCGAGCTGCGGAGCTCCGGAACCTCCGTCCATGTCCTGAACCCTCAGCAGTGGGATGCTTTTAGTTGACATGGATGATGAAGATGGCAGGTGCTTGCTAGATGTTATATGtGACCCTCAAGCTCTCAACGACTTTCTTCATGGATCAGAAACACAACTGGACACTGACGACCTTTTGGATGGCTCGAGTGACCCGTCCAGCTCTTTCTTCTCTGGTACTGGGGGACACGTTCCTGAAGTCCAGCCACCGGCTCAGCTATCGACAAGCGAGCCATCTGGGCTGCCCAGAGTCAGCGTCGATTTGGACTTCCTGGAGGACGATGACATCCTCGGAGGCTCACCAGGAGGAGGCGGAGATGGTGGGAGCAATGGCGTTGACTCAAATCACGAACCATGTGACATTCTGCAACAGAGTCTGGCGGAAGCTAACATTACAGAACAGAGCCTTCAAGAGGCGGAAGCTGAGCTTGATCTTAGCTCTTTCGGGCTAACTAATTTGACACAGGTAGTCCAGCCTTTGCCTGATACCAGTAGTTTGCCTGGGGTGGGCATTGGAGGAGCTACACAGATCTTTCCCAGCCAAGGTTCCACTACCACTCCCTCCACTGCGACCACAGATATGCTTGGTTCAGTTCTGGCTCACCCGGGCCTGCAGATTCAACCACAGGTTATGAACAAGGCCATCAGTGTCCAGCCATTCATGCAGCCTGTCGGGCTCGGAAATGTAACCCTTCAACCCATTTCAAGCCTTCAGACTCTACCAAATGGAAGCCAGTCGGGACATTTGGGCATTGGACAGATTCAGGTTGTGGGCCAACCCACTGTAATGACTATCAATCCATCTGGCCAGCAGATCCTGACTAAACCCATGGGTAGTTATCAGCTGCATCAACCTGGGCCAGAGACTGCAGGTTCTGGAGCCCAAACTGGACTCGGAGGTTCTGTGCTTAGCTCTGGAGGGGGACTTTTGATTCAGGGAGGCAAGGCTACACTAGGGTCCCCATCTTTGAATGGCCCTGCTGTCTGTGTTAGCACCACAAACACCAACAGCAGCGGCACTGCAATGGCCACACCAAGTGGCATAGTGGGATTTAGTGGTGCTGCCCTAAGCACAGGGATCGGATCTCAAACTCAACCTCAGCCACAGAGCCAAATTATGCAGAATGTCATCATCCAGCGAACACCAACTCCAATACAACCCAAACCTCCGCAAGGTGGCACCATACCACCCAAACTCTTTAAACAACAGccacagcaacaacaacaacttcCAACCCCACATGTATTACAGAATGATGCCAGTAAGGCTCTTGGAGTGCAGCAGGTTCCAGTGTCTGCTGCTCAGAATGTAGCCTTCCTAACTGGCAAGCCCGGTTCAAACGTTGTCTTGAGTACCCAGGCCACCACCCAGGGGGCACAGTTCCCCCAGGCTCTGTTTAAGTCGCAGGTTGCTCCGGCATCAGGCAAACCCCTTAGTGTCCATTTACTAAATCAACAGGGCAGCATAGTCATTCCCTCTCAGGCTGTCTTGCAAGGTCAGAACCATCAGTTTCTTCTCCCTCAGCTTCAGGCTGGAGGACAGATCCTGGCTCAGCATCCTGGGGGTCACATTATCACCAGTTCGGGACCAAGTGGACAGATAATCGCTGCTAATCAGATTTTAACAGCTAATCAGAACATCAATCTTAGCCAGGTTTTGGCCTCACAGGGCCATCCTGGTGCTGCCCACATTCTCTCTGGGCCCATCCAGCTCCAGCCTGGACAGATGGGCCACCCTACACTCTTCCAGATGCCTGTCTCCTTAGCCCAGACACAGAACCAAGCGCATCCAGTGACGGGACACGTTCAGACGGTTATACAGGGCATGCCTATCCAAAACTCCTTGTCAATAGAGGGACTAAGCCCGGCAGTCAGTTTGCAGCCAACCCTTCAACAGCAGGCTACTGGCATTCCCACCAACAGCAGCACTGGAGCAGCAGCAATGGCACAGTGCCAGCCTGGGGAGAGCATCACTGTGCTGGGTAGCTCAACTGAGCAGGCTGCCCAACCGCAACCCCAAACCTCCATCCTGACTGTACAGACGGCTCCATCTGTTTCGGCGCCAGCATCGGTTCCCTCCTCTTCAGCTCCATCCTCTACAGTGGTGACACCTGCGCCCTCAGTGACGACGCTGGGTTTGGGCCACCAGGCCCAGCACAGTCCAGGAAAGGTGTTGTTCACACCACCAGGCCCCAGTATGATCCTCGGTCAAGAGTCCATGCAGATGTTCCTGCAGcagGACCAGCAGCATCAAGCAGGGAAAGACCCGCCCGCCTCTGTGGGCGTACCTGCATCTGTTATCGTCAGCGGCGGCGGCAGCTCTGGTCCCGCCCCTGCAGGCCATGACAACCCGTTAGCTGAGACTCGCCCGGGGCAGAGTCCGAGCCCCTCCCTCGGCCCCGCTCACATGGCAGCATTGGTTAACAAGGTTCCATCCTCGGCACATCAGCAGACTCTAAAACTCCAAAGCGCCTCCCCCTCTCAGTCTGGACCCTCCAACAGCGCCACGCCAACCCTGTCAGAGAGCCCACAGCCATCTCAGGCTTCTCCTCTAACACTGGGCCAGCAGATTCAGTCTCCTCATCCTCCCCCCCAGTCCCGACCTCCCTCTCAGCCCCAGGCGCAGCCCCCCTCCCAGTCCCAGACCCCTACTAGGGCATGCACACCTTCCTCTCTACCTCCACTCTTTATAATACACAATCAGATAGGGGGCTCTCCGCAGGGGCCTCAGCTCTCGGCCCAGTCAGCTCAGGCCCAAAGTCAGCAGATCCAAGTGCAGCTGCCCCAGGTTCTGCCCCAGCCAGTCCCACAGCCTGTAGTTCTTCAACAGGAGCAGTCCCCCTCCTCCTGCTCCCCAAAGCCTCCCCAGGTGCCTGCCCAGGTGCTTTCCCAGGCCCCTCCCACTTTCCAGTTTGCACCCACTGCAATAGGCACCTCCACTGGGGCAGTGTTGAAGCAACAGGTGACTGTCCCAGGTTTGAATCCTGAACAGCAGCATCATTTACAGCTGATTAACGCCCAAATACAGACCATGTCCTCCATCGCCCAGCCCTCTCCGCAGCAGAAGCAGCTATTGGACAAGCTCCACCAGGTTCAACAAAACATCCTTCTTCAGGCCAAACAGCAGGCTCAAGCTCAAGCCCAAGCTCAAGCCCAAGCCCAGGCCCACGCTCAAGCTCAAGCTCAGGCTCAGGCTCAGACGCAGGGAGCAAGTCAGTTCAGCAAACTACCTGAGCAGCCTTCAGCACAAGTGATGACCTCAGCCAGCGCTGCTGCCAGCGGATCAGTCCCGTCAGTTCTGCAGCAAAAATCTGTGCTCATCAAGTCCTCAGCTACAGGTTCTAATGATATACAGGTACTGGCTGGAGCGCAGGCATCTTCTGGTGTTACTGTCAACCAGGGAATAGCCCCTCCTAACATCGGTCAGACTGTTCAGGCAAAACCAGGAGTAATAAGTGGAGTTGGGGGGCTTGCAGTTGGCAAACCAGGATTACAGATTCAGGTTCTGAGCGGCGGAATTTCTCAGATGCCGGCACCACAGCCTCCTGCTCCCGTTCAGACTCAGACATCAGCTTTGAAAAGGCCTTTTAGTATGGAGACGAGTAAAGAGGCTCGAATGCTGGAACAGCTGAGGAAGCTTCAGGGTTCTGTATTACACCCAGACTACAGCTCACCGTTCTGTTCGTTCGAGGACACTTTGCACCGGCTCCTGCCCTACCACCTGTACCAGGGCATGGCCCCTTCCACTCAGGACTACCGCAGAGTGGATGACGAGTTCCAGAACGTCTCCTGCCAACTTCTGAAGCGTACACAAGCCATGCTGGACAAATATCGTCACCTGCTCTTTGAAGAATCAAGGAGGCTGGGTCCTTCTGCTGAGATGGTGATGATTGATAGGATGTTCATCCAGGAAGAGAAGATTGCGCTAAACCAGGACAAAATACTGGCTAAAGAGAAGCCAGAAGAGTTTGTGGCCAACTCCTGTTTGCTGAACAGAAGTGCGGACAGCTCCATGAGGCCAGCAGCAGTGGAACTAAGCTCTGTCCGAACAGGCCCATCCGCTCTAGTGCCGACCCACGTACCTGCCACCCCGTCTCCAGCTCCTCCTACGGGCACTACCGCCCccgctgctgctcctgctgctgctgcctctgctGATGCCCCTTCTCCTCCTTCCTTCCATCCCACCAAGCTAGTGATAAAGCAAGGAGGAGGGGGTGCGCTAGTGTCGTGGTCCACCAGTGTCTCCCCTACGCCTGTTCCAGCTGTGCGGCCCAGTGCCGAACCTGTAGCACAGAGCTCAGACCGTTCCTTCAGTCGTGCCTCGTCCTCTGTATGTTCAGCTGACGATGAAGACGATGATGTTGCGCTCCCACAGCGGACCAGCAAACCACCTATGAAGACCTATGAGGCACGACAGCGAATCGGCTTGAAGTTGAAAATAAAGCAGGAGGCAGGGTTTAGCAAAGTGGTTCACAACACTGCCTTAGACCCTGTTCATTCACAGACCCAGCATGCCCCACAACCACAAACCTCTGAGCCACCCTCCAAAACCAGACCCCCTGTAACACAAACAGCAACAGTCATTAGGACTCCACCCCCCACTTGTAACCCCACCACTTCCACAACTTTCAGTGCAGTGACCACACATGCAAGCTCCACCTCTGGTGGCATAGCTTCCTCCACAGCCCCTCCTTCCTCTGCATCTCACACATGGTCTTCGTCATCCTCTTCAACTTCTTCTGCCCAGATGAACGGCACTCTGGAGCACCACGAAGTGGGCGGAATCAAACGGAACCCTACCTCCACGACAACGTCTCAGACGACTACCTGCCGACTCCCTTTGCGCAAAACTTACCGTGAGAACATCAGTCCTCGCCACCGGCCGGGAGTCCCAGGGGGTGGTGATATTATACCCATGCCACAACCAGCACCTGCAGGACCCCTAATCTCCTCTCCCCAGCCAGAGCGGACGGTAATTGCCAGCGTGAAGTTGGAGCGGCAGGGTGGTAGTGGGCTCGCTCACCCCCACACGGACCCTGGCTCGCAAGGCTTGATGGCGGTAGAGGACGAATTCTTTCGCGGAATCAAAAACGcttatcaccaccaccaccaccaacagcagcagcagttctcTGACAAAGAGGACGAGGGAGACGGGGACGGTGGGAGCCGCATGGGGAGGGTGAAGGGCTTGGTGAGTAAAAGCAGAGAGCGGGCTCTGGGGACATTTCAGATGGACCAGCATGCGCCTGGTCCTCCATCTCCAGGAGAAACATCTTGCACAAGAGACTCTTCATCACTTCCTGCAAAACGGTGTAAATCGGACTCTCCAGACATGGACAATGCCAGCTTCTCGAGCGGCAGTCCCCCACCGGACGACTCGCTCAATGAACACCTGCAGTGTGCTATTGACAGCATACTGAACCTGCAGCAGGGCCCGCCAGGCAGGGGAGCCATGGGCAGGGTCCATGCAGCAAGCCTAACGAACCAGCACCAAACCCACCACCGCCAGGGCACATCGTCATCTTCATCGTccacatacagacactctgtctcttcctcttcATCTCCATCTTCATCCTCCATGTCCCAGCACCCACAGGTAGGGGGCAGAGGGCAGAACGGAAGTCTGGTGTCTCAGACGCACAGTAGATAACAGCCCCTGTGGTCAGTAGACTCTGAAGGACTTGGGAGGGGTGGGGGTGGAGTCTCTGTTCAGCTGTGTTTGCCTTGTTTGTCTGCGGGTGGTTTAAATGCGACTCTGAGAGTAAGTGTACTAAAGGATGAAGTGCACTctcgctcttttttttttttttttttttgtatttttttgtgttctctGTTGGGAAGCTTCAGGCCAGTTCCTAATCAGTGCTTGTGGACAGGaggtcacttttttttcttacaaaaatgcattattaatgaCATGGTGGGGCCAGATGAGCCTATCAGTTGTCAATATGATTTATGTActttaaataatcataattgGTCTGATTTACAGTCCCTGGTGAATTTACATAACCATAGCGTTCTGTCTTCCGTGTCTGTTTATCTTTGGTGATGTTTTATCATATCAAATGGACTGAGGTACCTGCAGTGTAATTCTTTGATTTTCAGATTAGGTCTCTTTTGTCCACTAGAGGGAGATGATTGGTTCTCCCTCTTTAGCACAAACTTAATGaattgatttagaaactgaataaGCCTCAGAAGGTTTGTGTAACTTTTTCCTTCATGAGCCTCACATTTGAAAAACATCCATGAAAGCAAGTTCTGTTAACCCTGTGTTTTCTGGGTCGTTAAGTGTCGACACTAACAGACGGCAAGTTTACAAAACTGAAGGAAGTAAAAGCAGCTGACCTGAAATCGGGTCACCATCTGGAAGAAGTTTTACATAACACACCTGTGCAGGGAATCTTTTGTTTTTGGAGGGTGAGATCGTCTGACGGCAAATCCAGGATTCCCCTCACCGTTCTCAGAGATCTGCCTCCTGCTGAGTTTACATACATCTGTCACGTGTAGCTGTAATTACTATAGATATACTATGATTGATAGAGCTGATATAGCTCAGTCTGAAGTTAGATCACTGTTGGCAGTAAACTTGGCAGGAGAAGTTGTCTCTTGGAGCGAAGCGGTGTGTTCACCAGAGGACTGGTGGAATAGCTTTAGAAAATTGTTTTTAGTGGTTCTCAGTTCTAGACTGTAATCTAGTACcaacatattttctttaaatcagGAACAGGagagcagaaaaacacacagacgGTGTTGTGGGATCGCTGAGCCTCGGACTTAAACGCCTGTTTAATCAGTATTTTCTGTCTGGGAGCTTTTTTGAACTGTAAGCTCTGTCACAGACATTTGAGGCTCTGAAGTCACCCTCctaatttatttctatttattttttttgtacacatACTTATGGCTGCTTCTAAGCCCTTTTGGACAATTCAAAAGCAAACACAGCTTAAGCAATGACTTGGAAATTGaacaataataatgtaaagGAAAAATAGAACTGTAAGAATTTGAAGTATAGTACTACAAattaattttgtattgtatttattgtgtataatgacactttttaaaaagaactgTACATTTAGTAAAACTGTAAATTAAACCTTGCTTCTTTTATGAAAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU217588 lncRNA upstream 3632 25540409 ~ 25546750 (+) True G160576
TU217527 lncRNA upstream 130443 25417643 ~ 25419939 (+) True G160543
TU217493 lncRNA upstream 169889 25323403 ~ 25380493 (+) True G160518
TU217332 lncRNA upstream 501804 25047099 ~ 25048578 (+) False G160384
TU217331 lncRNA upstream 501846 25047099 ~ 25048536 (+) False G160384
TU217655 lncRNA downstream 30340 25594952 ~ 25596119 (+) False G160617
TU217654 lncRNA downstream 31100 25595712 ~ 25599301 (+) True G160617
TU217651 lncRNA downstream 47104 25611716 ~ 25613928 (+) False G160616
TU217652 lncRNA downstream 48974 25613586 ~ 25615298 (+) True G160616
TU217720 lncRNA downstream 139905 25704517 ~ 25706252 (+) True G160647
XM_022679768.1 mRNA upstream 29237 25510323 ~ 25521145 (+) True dhx34
XM_022679770.1 mRNA upstream 40215 25504077 ~ 25510167 (+) True LOC103024914
XM_007259546.3 mRNA upstream 49773 25483944 ~ 25500609 (+) True LOC103023437
XM_007259535.3 mRNA upstream 469956 25068911 ~ 25080426 (+) True cxcr5
XM_007259531.3 mRNA upstream 1147241 24219864 ~ 24403141 (+) True nectin1
XM_007235660.3 mRNA downstream 1680 25566292 ~ 25576097 (+) True ehd2
XM_007235661.3 mRNA downstream 1681 25566293 ~ 25576097 (+) False ehd2
XM_007235662.3 mRNA downstream 16547 25581159 ~ 25586694 (+) True LOC103039536
XM_022679775.1 mRNA downstream 18232 25582844 ~ 25586694 (+) False LOC103039536
XM_022679982.1 mRNA downstream 28774 25593386 ~ 25594254 (+) True LOC111194838
TU217233 other upstream 1430557 24119129 ~ 24119825 (+) True G160306
TU217011 other upstream 2696301 22853412 ~ 22854081 (+) True G160134
XR_002651264.1 other upstream 2927075 22622839 ~ 22623307 (+) True LOC111194779
TU216738 other upstream 3397597 22147844 ~ 22152785 (+) True G159926
TU216515 other upstream 4538588 21009302 ~ 21011794 (+) True G159748
TU217966 other downstream 1184767 26749379 ~ 26755313 (+) False LOC103021732
TU218064 other downstream 1340632 26905244 ~ 26907627 (+) True G160919
XR_002651269.1 other downstream 1545059 27109671 ~ 27117211 (+) False ccnl1
TU218548 other downstream 3057516 28622128 ~ 28624785 (+) True G161292
XR_002651275.1 other downstream 3181084 28745696 ~ 28759007 (+) False fam219b