RNA id: XM_007235661.3


Basic Information

Item Value
RNA id XM_007235661.3
length 3009
RNA type mRNA
GC content 0.48
exon number 7
gene id ehd2
representative False

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 25566292 ~ 25576097 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttagagagagagagattgagtgtagagggagcaagagagaagggaggtagagggagagagagtgcagTAGCGGGTGGAGGACGCAGAAGGCTGAGCTGGGCTGGTTTGGAGCAGAGCTGAGCTGAGGGCAGAAGGTTTATCCTTATATGTAGAAACTGCTTCTAGGGGTCAGGCTTTAGATCTCAACAGCTGGAGCAGAACTGAGCCAAACTGCAGCAGAAACCAAGAAATATCAAgcctttaatattttatttgtttgtgacCTCTCTCACTCCAGttaaaaaagaaaagaagataacCAGTTCTAAAGGAAGAAATAAAAGATCACAATTTTATACTAGCACTGGGAGGCCGATCTGCAGGAGGAAGTTTAGTAAATTCAGGAAAAAGAAGACAGGCCTGCAGCTCCATCTGCGGTAACATAAACACTAAGCCCGGCTTCAAAACAGAACCATAAATTAGCCTCAGTCCCACACCATGTCTCGCTGGGGCCGGAAAAATGTGAAGAAGGCCCCGGAGGTGATCCGTACGGTCACAGAGGGCCTGAAGTCGCTCTATCAAAAGAAGCTTTTACCAATCGAGGAATATTATGGTTTCCAAGACTTCCACTCGTCCACTTTGGAGGAGGCAGACTTCGATAACAAGCCGATGGTTCTGGTGGTCGGACAATACTCCACTGGAAAGACCACCTTCATCAAATACCTGCTGGAGCAAGATGTGCCTGGAAGCCGTGTGGGACCCGAACCCACTACAGACTCCTTTACTGCCATCATGCATGGAGAAGTGGAGGGCCTAATCCCTGGAAATGCTCTGATTGTCGACCCCAACAAGCCTTTCCGCCAACTTCACCCATTCGGAAACACTTTCCTCAACAGATTTCAGTGTGCACAGCTTCCCAACCAGGTTCTGGAGAGCATCAGTATCATCGACACGCCCGGCATCCTGTCCGGAGCCAAGCAGAGAGTCAGCCGAGGCTATGACTTCCCGGCCGTCCTGCGTTGGTTCGCTGAGCGTGTGGACCGGATCATCCTCCTGTTTGATGCTCACAAGCTGGAGATTTCCGATGAGTTTTCAGAGGCCATAGGAGCTCTGAGGGGCAACGAGGACAAGCTGCGGGTGGTGTTGAACAAGGCCGACATGGTGGGGACCCAACAGCTGATGAGGGTATATGGGGCACTCATGTGGTCTCTGGGGAAGGTTTTTGGCACCCCTGAGGTTCTGAGGGTGTATATTGGATCGTTCTGGTCTGAGCCTCTTATGGTTCCAGATAACAGGAAGTTGTTTGAGCTGGAAGAGGAAGATCTGTTTGCTGACATTCAGAACCTGCCGCGTAATGCCGCTCTACGCAAACTGAACGACCTGGTGAAGAGAGCTCGGCTCGTCAGGGTCCACGCTCACATCATCAGTTATCTGAAGCAAGAGATGCCATCCGTCTTCAGGAAGGACAATAAAAAGAAGAACCTTATCTACCAGCTGCCTGTCATCTTCTCCAAGAtccagctgcagcaccacattTCCCCTGGAGATTTCCCTGACTGCGCCAAGATGCAGGAACAGCTCGTGGGTCATGACTTCTCCAAGTTCAAATCCCTGAAGCCGAACATGATGGCTATGCTGGATGAGCTGCTGTCAACCGACATCGCCAAGCTAATGCCTCTCCTCAGGCAGGAGGAGCTGGAGGCGGGGGTCCAACCCGGAGTCCAAGGAGGAGCGTTCCTGGGCACCCGTGCTGGGCCCTTCGTGGAGGGTGACCCTTTCGGCGAGAAATGCGAGGAAGACGGCGAGAATGCCGAGGCTGAAGAGGATTGGGTCGTGACAAAGGATAAGCCAAAGTATGACGAGATTTTCTACAACTTAGCCCCCAACGAGGGCAAGCTGAGCGGCACCAAAGCCAAAGACTGGATGGTCAGCACACGGCTTCCCAACTCTGTGTTGGGCCGCATCTGGAAGCTGTCCGACGTGGACCGGGATGGCATGCTGGATGATGAGGAGTTCGCCCTCGCCAGTCACCTGATTGAGGTGAAGCTGGAGGGGCACGGCCTGCCACCCGAGCTACCTGCTCGCCTGGTGCCCCCCTCCAAGCGCAGACAAAAAGGATCTGATGCCTAGACAATATCAGTTGCACATCCATGAGGGTTACTAAATGATCATAATGAGACTTCTCATAATATACTGAGATGAAAAGttaccaaacaaacactgaGAATCTTCACCTTTTATTAAACTGTCTCCTGTTTCGGCTCGAACATCACCCAAATCTTTAATCAGCCGAAATCCCAGAGTGCATGCCCTGTGCCTGTGCTATGCCCATGCTATGCCATTCTTTGGCATATTCACTGCATTTAAAGAAACTGTGCTCTGTTGGGCACTCTGGCACCGTGCTGGTCCGAAATTTTTATCAGAGAAGATTTTTATTTAGTGAAACTGTGAAAAATAATTCAGCTCACAGGAGAGTGGCAGGCCTTGCAGTCTGATTGCAGGCATGCACCGCACTGCCGCTCCCAGTTTATCTTctgctgtaaaatgtaaatgagaTCAACGGCTAATTCGAATAACAAATTAGAGTTTAAAAATGAGGAGCTTTTTCACGCTTACAGAAATAACCCAGCCTGCTGCAGATATCTTACAGAGGAATTATAAGAaatagtaaaaagaaaaaactattcAAATGTGAAATGTAGTCATGTGATGGAAAGTTTGTTTCTAAACAAGTTTGTAACTTTTATGTCTTTTTGTCTTTCCTCGCATGAACTCCTGCCATTTCAAGTGAAAGaaatctctgtctttctgtactctgtcatttctctttttgttcctttatttgtattgtttttatattgaatTGAGTTCATTACATTAAAGAAATGAATGTTCCACGTATGTAAATTTAGATTCAATGTTGAAGAATGTAATGACGAGGATCTCACTGACTACTACACTGCTTTAccacagcttttatattaaccatcattaaaacaccaaataaaatattttcagcaCACGTGTTTA

Function

GO:

id name namespace
GO:0006184 obsolete GTP catabolic process biological_process
GO:0003924 GTPase activity molecular_function
GO:0005509 calcium ion binding molecular_function
GO:0005525 GTP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU217588 lncRNA upstream 19543 25540409 ~ 25546750 (+) True G160576
TU217527 lncRNA upstream 146354 25417643 ~ 25419939 (+) True G160543
TU217493 lncRNA upstream 185800 25323403 ~ 25380493 (+) True G160518
TU217332 lncRNA upstream 517715 25047099 ~ 25048578 (+) False G160384
TU217331 lncRNA upstream 517757 25047099 ~ 25048536 (+) False G160384
TU217655 lncRNA downstream 18855 25594952 ~ 25596119 (+) False G160617
TU217654 lncRNA downstream 19615 25595712 ~ 25599301 (+) True G160617
TU217651 lncRNA downstream 35619 25611716 ~ 25613928 (+) False G160616
TU217652 lncRNA downstream 37489 25613586 ~ 25615298 (+) True G160616
TU217720 lncRNA downstream 128420 25704517 ~ 25706252 (+) True G160647
XM_007235657.3 mRNA upstream 1681 25549428 ~ 25564612 (+) True bicra
XM_007235662.3 mRNA downstream 5062 25581159 ~ 25586694 (+) True LOC103039536
XM_022679775.1 mRNA downstream 6747 25582844 ~ 25586694 (+) False LOC103039536
XM_022679982.1 mRNA downstream 17289 25593386 ~ 25594254 (+) True LOC111194838
XM_007235670.3 mRNA downstream 56487 25632584 ~ 25643495 (+) True LOC103041999
XM_007235675.3 mRNA downstream 88689 25664786 ~ 25686023 (+) False LOC103042827
TU217233 other upstream 1446468 24119129 ~ 24119825 (+) True G160306
TU217011 other upstream 2712212 22853412 ~ 22854081 (+) True G160134
XR_002651264.1 other upstream 2942986 22622839 ~ 22623307 (+) True LOC111194779
TU216738 other upstream 3413508 22147844 ~ 22152785 (+) True G159926
TU216515 other upstream 4554499 21009302 ~ 21011794 (+) True G159748
TU217966 other downstream 1173282 26749379 ~ 26755313 (+) False LOC103021732
TU218064 other downstream 1329147 26905244 ~ 26907627 (+) True G160919
XR_002651269.1 other downstream 1533574 27109671 ~ 27117211 (+) False ccnl1
TU218548 other downstream 3046031 28622128 ~ 28624785 (+) True G161292
XR_002651275.1 other downstream 3169599 28745696 ~ 28759007 (+) False fam219b

Expression Profile