RNA id: XM_007235670.3


Basic Information

Item Value
RNA id XM_007235670.3
length 2348
RNA type mRNA
GC content 0.43
exon number 18
gene id LOC103041999
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 25632584 ~ 25643495 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TAATCTTATGGTGGTGAGTCGCATCAACTCAAGTCATTGGAATAATCTGCGTGACAGTAAAATTTAAGATTGCGATAGTGTGGAAATTACTGAAAATGACCTTATGACCATGTggttaattaataataagagACAACAAGGAAGGTTGGGTATATTCTTTAGTGTTATCACTCAGCACTTGTCACTCAGACCAAAGGAGCAGCAGAATGACGGACACTGATGGGATTCAGTTAAAAGGTGTCTCCAGCATAAATGGACATGGAGTGGACAATCCAGCATTTCAAGCAGAGGATGAGAAACCGTCAGATCAACagaatgagcttcaagaggagGAAACAAAGAAATCCAAGTCCTTTGTAAATAAATTATTCACGCCTCTCACGGCCACTGAAAAGTTCCTGAAGACCCACTCTAAAATCATCAAGTACATTGCCCTGGGAATACTTTCAGCAGGCTATGTGGCGTACTTCATTGCTGCCTGCTGGCTGAACTTCCAGAGAGCTGTTGCTCTAGTTGTTCTCACCAGTGTGGCAGTGTTCTTCACTGTGTACGATCTTGTGAAGAAGTACAAGGGTGACAGTATAAAGCGGTGCTTCAAGCCTGCTGTGAGATGCTTTAATGCCAACATCAGGTGGATCAAATGGGTGTTTATAGTGATAGTGCTCGGACTGCTGGTGGCATGGCTGGTAGTAGACACAAGCAAGCGCCCGGAGCAGCTCATCTCCTTTGGTGGCGTGTGTCTCTTCATTTTGGGCTTGTTCTTATTTTCTGAACACAGAAGTGCGGTGCGCTGGAGGACCCTCTTCTGGGGTCTTGGTCTTCAGTTTGTCATCGGTCTGTTTGTTATACGGACAACACCAGGATATGTAGCTTTCAACTGGCTTGGAGATCAAGTTCAGacgtTTTTAAACTACACCCAAGCTGGCTCGGCTTTTGTTTTTGGTCAACTGGTTGAAGCAGGAATTTTTGCATTTCAGGCTTTGCCTATAGTgatttttttcagcagtgtTATGTCTGTCCTGTACTACCTTGGAGTGATGCAGTGGGTAATCCTTAAGATCTCCTGGATTATGCAGATCACAATGGGAACCTCTCCTACAGAGTCACTGAGTGTTGCAGGGAATATATTTGTTGGACAGacTGAAGCTCCACTGCTGATTCGCCCATATCTGAAAGACATGACCAAGTCTGAGATCCATGCGGTCATAGTTGGAGGTTTTGCCACTATTGCTGGCAGTGTGATGGGagctttcatttcatttggGATTGATGCTTCGTCTTTGATCTCTGCCTCTGTGATGGCTGCCCCTTGTGCCTTAGCTGTGGCCAAACTCTCGTATCCTGAGACTGAGGAGAGCAAGTTTAAATCCAAAGCTAATATCAAAGTGGACGGCGGgGGTGAACAGAATATTTTAGAGGCTGCAAGTGCAGGAGCATCTGCATCGATAGGTCTTGTGGCTAACATAGCTGCCAACCTGATTGCGTTTCTTGCAATTTTGGATTTCATTAacgctgctttgaaatggctggGAGGAATGGTGGGCTACCCAGATATCACTTTTGAGATCATCTGCTCATACGTGTTCATGCCTGTGGCCTTTATGATGGGTATACCAGTGGAAGAGTCCTTCACAGTGGCTGAACTCATCGGGACAAAGCTCTTCCTCAACGAGTTTATAGCTTATGAGAAGCTGTCCAAGCTGAAAAATAACCGACTAAACGGCATCACAGAAGTCGGGCAGTACATCTCAGTCAGATCAGAAATCATAAGCACCTATGCTTTGTGTGGTTTTGCCAACTTCAGTTCTCTTGGAATTGTCATTGGAGGCCTGTCCTCCATTTGTCCCTCAAGAAAAAGTGACATCTCTGCTTTAGTGCTGAGAGCCTTGTTCACAGGCACATGTGTTTCACTGATTAACGCGTGTGTTGCTGGTCTTCTTTTCGTTCCTCCCCTGGACTGTATAGCAGTGTTTAAAGGGACTGTCTTTAATGCCACTGATTCTAGTATCCAAACCTGCTGCTATGATCTCTTTGACAGTGCTGTGAGAAATGGAACACTGGTTTCTTTTGAGGGATCGTGGAACGTGGTGACAAATGCGACTGTTTACTTCACTGATTGTTGTCAACTTTTTAATGAAACCATATGCACTTGAGACCATTCGAAAGCAAACTTGTACACAATGTACACAGCtcattttaaacactgtaaagaAATGATTGTCATATGTTATAATGTATTTGCGTCACacaactcattttttttaatatgtggaTCACCATAAAACAATGTTGATATTTTCTgctgtattatatattgtaaataataaagagGGAAATCTAAGAAAATA

Function

GO:

id name namespace
GO:1901642 nucleoside transmembrane transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0005415 nucleoside molecular_function
GO:0001882 nucleoside binding molecular_function

KEGG:

id description
K11536 SLC28A; pyrimidine nucleoside transport protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU217652 lncRNA upstream 17286 25613586 ~ 25615298 (+) True G160616
TU217651 lncRNA upstream 18656 25611716 ~ 25613928 (+) False G160616
TU217654 lncRNA upstream 33283 25595712 ~ 25599301 (+) True G160617
TU217655 lncRNA upstream 36465 25594952 ~ 25596119 (+) False G160617
TU217588 lncRNA upstream 85834 25540409 ~ 25546750 (+) True G160576
TU217720 lncRNA downstream 61022 25704517 ~ 25706252 (+) True G160647
TU217727 lncRNA downstream 95292 25738787 ~ 25739361 (+) True G160654
XR_002651266.1 lncRNA downstream 194943 25838438 ~ 25842937 (+) True LOC111194781
TU217831 lncRNA downstream 303300 25946795 ~ 25947007 (+) True G160732
TU217845 lncRNA downstream 350225 25993720 ~ 25993971 (+) True G160746
XM_022679982.1 mRNA upstream 38330 25593386 ~ 25594254 (+) True LOC111194838
XM_007235662.3 mRNA upstream 45890 25581159 ~ 25586694 (+) True LOC103039536
XM_022679775.1 mRNA upstream 45890 25582844 ~ 25586694 (+) False LOC103039536
XM_007235660.3 mRNA upstream 56487 25566292 ~ 25576097 (+) True ehd2
XM_007235661.3 mRNA upstream 56487 25566293 ~ 25576097 (+) False ehd2
XM_007235675.3 mRNA downstream 21291 25664786 ~ 25686023 (+) False LOC103042827
XM_007235673.3 mRNA downstream 21292 25664787 ~ 25686023 (+) True LOC103042827
XM_007235674.3 mRNA downstream 21292 25664787 ~ 25686023 (+) False LOC103042827
XM_007235680.3 mRNA downstream 45758 25689253 ~ 25838066 (+) True frmd5
XM_022679777.1 mRNA downstream 45758 25689253 ~ 25838066 (+) False frmd5
TU217233 other upstream 1512759 24119129 ~ 24119825 (+) True G160306
TU217011 other upstream 2778503 22853412 ~ 22854081 (+) True G160134
XR_002651264.1 other upstream 3009277 22622839 ~ 22623307 (+) True LOC111194779
TU216738 other upstream 3479799 22147844 ~ 22152785 (+) True G159926
TU216515 other upstream 4620790 21009302 ~ 21011794 (+) True G159748
TU217966 other downstream 1105884 26749379 ~ 26755313 (+) False LOC103021732
TU218064 other downstream 1261749 26905244 ~ 26907627 (+) True G160919
XR_002651269.1 other downstream 1466176 27109671 ~ 27117211 (+) False ccnl1
TU218548 other downstream 2978633 28622128 ~ 28624785 (+) True G161292
XR_002651275.1 other downstream 3102201 28745696 ~ 28759007 (+) False fam219b

Expression Profile