RNA id: XM_007235673.3


Basic Information

Item Value
RNA id XM_007235673.3
length 4112
RNA type mRNA
GC content 0.43
exon number 15
gene id LOC103042827
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 25664786 ~ 25686023 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGCTGTGATAAAACATTGTAACTGTGTAACCTGTGAGCAAAGCTGTAGCGAGGCTGTAATAAAGCGGAGAACACTGTCACAGCTTCCTCTGTCTGCTGTGAGCTCAAATCTCTGTTTAACACACTCCCTAAAGCTCTGTCCTATCTGAAACTGTACTGTGTGAGCGGTGAGGCTAGTGGTTCCGGTAGTGGGAGGGAGGATACACTGTTCCGGGAACTCGTCTGCGCTCCTTTTCccccctgttctctctctctgtgtgtgtgtaacacaggtagctccgctctctctctttctctctccgccGCGGTGTGTGACCCGGAGATCAGGGACAGCTCTGGACTCGGCTCGGGGGTCTCAGcagataataataacaataagatGTAATGACGACCTACTGTACAGACAGAGCAGTGTCTCTGTGGCCAACCTTGTGTACACCTAAAGAAGGTCCAGCAGCCATGAGGATTGAAATATCCATCGTACAGCAgcctttgtctgtgtgtgttccacGAAACTATCCTGTGACACTCAGTGTTCAAGCAATTGGCACAGGCTCTTTGAGGTACCAGTGGTTTGATGGTCGACAAGAAGAgGTGGAACATGGCACAGAGCGTAAGCTTGACATTTGTCTACAAAAATCAGAGAAGTACATTTGCAGAGTGAGCGACCAGTACTGCAACTTTGTCTTCACTGAATGGGTCAAAGTAAAGGTGTTAAACTCACCAGtagGTGTCCCACCTGCATGGAGAGGGCAGCCCTATATTATAGTCCAACCTACAGTATGCCAACCTGTACAGCATGGAAGCACGTTCACCCTAAAATGCTCCGCTATTGGCATACCTTCTCCTTATTACCAGTGGTACCACAATGGGCACCCCTTACCCaaggaaaacaaagaaacatttGAAATTAAACAAGTAAAAGCTGAGAGTGCTGGCTCATATCTCTGCTCTGTTTCAAATGTTTTGGGGGAGAGATGGTCAGATGCAGCTGAAGTTGAAATTGCAGCTCCCGATAAGATTCCAGCACCCACACTTACAGCCACTGACAAAGTGGCATTGTTGATTGGAAACCTGAACTACAGCCACCACCCCAGACTAATGGCCCCCACTATGGATGTTCATGAGCTTGCTAGTCTGCTGCAGCAACTCGGCTTTCGTGTGGTGTCCCTGCTGGATCTCACCTTGCAGGAAATGAACTCAGCCATTGACAGTTTCCTGCAGCTCCTGGATCGTGGGGTCTATGCCGTGTTTTACTATGCTGGGCATGGTTATGAACACCTGGGCCGTAACTACCTCGTGGCCATTGATGCTCCGAGACCCTACCGCAcagagcactgtgtgtgtgtgcagagagTGATGTGGAGCATGCAGGAGAGACGAGCACAGCTCAACATCATTCTGCTGGACACCTGCAGAAAATGGTACAAACAAACTGGTGCAGCCTCTGATATTAACCCGCTGGCCCCTCTAGGGAACACAGTGTATGGATATGCCACGACTGAAGATGCTGAGGCTTTTGAGGTCCAGGATGGAGGAAAAAGCACTGGAATCTTTACCAAGTACCTGAACAAACACATCCTTCAGCCGAAGAAGGTCACCCATATCTTGGAGCAGGTCTCTGAAGATCTGGGTAAAGACCCGTTGGTGTGTGGAAGGCAGGTGGTGGAGATTAAATACACACTGAAGGAACCCCGGTCACTTACTGACCCGGTGGGGACAGCAGGACACACCATAGAGCTCAACTTGCGAGATGCCTGCTGGAAACAGGCTAATGTAATGCCCGGTCAGAAGCTTCTGGACTTTCCGTGTGGAGCTAAAGTGGAGCTCAGTTTTTCAGCCCTGTTCTCCAATGTCCTGCTTGCGTTCGGTACAGTGAAGAACACTGGCCCGATCGCTCAGGACTGCACTGTGGAACTCCGCAGTGACCCGACAATGGAGGACATTTTCTCAGGAACTGACAGCTCAGATGAAATGCAATCTCTACTGCTGAGCAAAGCAGACTATCCTGACTGCTGTCTGAGACTGTGCTGCCTCCAAAGACTCAAGAGATCACTGGTGATCAAGATAAAGTTAAGCTACACGCACCGGGACAGGAATGTGCGGCTGACCGAGTACAGAGAGGTGGACATCGACCGGCCACTGATAGCATCCTGCAGATTCAGTCAGAGGAAGccactggacaggagacgggaATCAGCACAGCCTAAGAGAGGTCACGACTCCGACATCAGACGGCCTTCACATCGCCTTGCTCACCCTGCGCGACCTTCAACCCGCAAGGCAGAAAACATCTGCCAGATCTCATCAAACACAACATCCGCTAGCACCAATGAGCCGGAGGAGAACGATGAAAATGACCCACAAGAATTTACATAGAAATATTCACTTTTTTCTTGTGAATGAATATAGCTCATTGTTATGGATTTGTGGAGAATGCACTGGAACACTTAACTCTGGTTAAAGTACAGATACTCTGCTGAAAACAAGGCTGAAGACTCAAGTCAAGGAAGATATGACAGATGATTTTGCAGTTCAACCATGGATCACTAAGCTCTGCTTTATGCATGCATTCCTGGAAAGTTTTTCTGAACTGCATCCCTACATGAGTTAGTTTATGATAGTTACATTACAGGTttgttttttccaaaaaaaaaaatattttgttaaaaccatgttacaacacatacacaaaaatgTATAGGCTATTCTGTTTAAAgcaatatttcagtgttttatagcTTCAAATGTACTGCATTTTTATCCTAATAATAGTTATGTGatacacattattatttaatattttataaagtgTATAACAGAGGCTGCTGGGTAGTTGCTGTATTACGTAAAAGTTTGAAGTTTGTGACCAACACAAATTtgaaactacactacactagaATTCACTACATTACCAACATGATAACATATTCCCAAAACCTTTCATATGAGGTCACACGCATCTTTTAAACATGTTCCAGTTTTCTAATATCTATGACGATCGTGCAGAAACCTTAGACATCTCCACTCGCATcactacattaataaaaatgtaataccatTTGTTCCTTCAGAAAATTAGTACAGATATACAAAACGATGTGTAAATACTATTCACTAAAGTATTCATGACAGTGctctttatattaattatacataATTTTCTAATACTATTTGGCAACTGCCCAGTAGCTTCTGCAATAATGTTGAGTAAACACTTTCCACTTAAGATCATATAGAAAGAAACACAGAGCTAACAACATTATCACAAGCTGAGTGTGTGCTACTTCAGGCTACATTTATTACAGAATGGGATATGTTTCGTTCTTTTTTACTTATACCTTTAATAATGGAGGtcctttttacattacattacattacattacattacatttggcagacgcttttgtccaaagtgacttacaatagtcaagtacaatgtaaaataagtttaaaggaaaaacatctttggatagggataaaaggaggacaaaggggaataataggatagaggagtgcaggaggggaagaaggaaatggggttagaagtagttagtgtgttagagggttagaggtgttaagagagtaagtgctctttgaagagctctgtcttcaggagtttcttaaagatagcgagagattctcctgatctggtagtggagggtagtttgttccaccattggggaactctgtatgagaacagtctggattgcattgtgtgaatgtttggcaaagcgaggcgacgttcactggaggagcgcagcggccgggaggtagcgtaagctatttttttaatttttttttttttttttattttagtaatcaatTATACTCCAGAGACATGACAAATgggatttgttttttgttaaaacaaaaaaggagaTTATGAAGAGTACATTAACTCATCAGGTGTATTGCTGCAGTTTTACCACTACTCTCATGGTATGTTTATGAAGGAAGGATGTTCTCATATGTAATGAAAACAAATGGAAATCATCtgtgtttacttgttttttattatttgtaatgtaattGATTGGAATGTTAAAATTGTATGTAAAATTTGTTATTTGACCTCAATCAAACTgtacaataaaaaattattttctgtaa

Function

GO: NA

KEGG:

id description
K07369 MALT1; mucosa-associated lymphoid tissue lymphoma translocation protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU217652 lncRNA upstream 49489 25613586 ~ 25615298 (+) True G160616
TU217651 lncRNA upstream 50859 25611716 ~ 25613928 (+) False G160616
TU217654 lncRNA upstream 65486 25595712 ~ 25599301 (+) True G160617
TU217655 lncRNA upstream 68668 25594952 ~ 25596119 (+) False G160617
TU217588 lncRNA upstream 118037 25540409 ~ 25546750 (+) True G160576
TU217720 lncRNA downstream 18494 25704517 ~ 25706252 (+) True G160647
TU217727 lncRNA downstream 52764 25738787 ~ 25739361 (+) True G160654
XR_002651266.1 lncRNA downstream 152415 25838438 ~ 25842937 (+) True LOC111194781
TU217831 lncRNA downstream 260772 25946795 ~ 25947007 (+) True G160732
TU217845 lncRNA downstream 307697 25993720 ~ 25993971 (+) True G160746
XM_007235670.3 mRNA upstream 21292 25632584 ~ 25643495 (+) True LOC103041999
XM_022679982.1 mRNA upstream 70533 25593386 ~ 25594254 (+) True LOC111194838
XM_007235662.3 mRNA upstream 78093 25581159 ~ 25586694 (+) True LOC103039536
XM_022679775.1 mRNA upstream 78093 25582844 ~ 25586694 (+) False LOC103039536
XM_007235661.3 mRNA upstream 88690 25566293 ~ 25576097 (+) False ehd2
XM_007235680.3 mRNA downstream 3230 25689253 ~ 25838066 (+) True frmd5
XM_022679777.1 mRNA downstream 3230 25689253 ~ 25838066 (+) False frmd5
XM_015602011.2 mRNA downstream 3230 25689253 ~ 25838066 (+) False frmd5
XM_022679778.1 mRNA downstream 110808 25796831 ~ 25838066 (+) False frmd5
XM_015602012.2 mRNA downstream 159593 25845616 ~ 25864023 (+) False blm
TU217233 other upstream 1544962 24119129 ~ 24119825 (+) True G160306
TU217011 other upstream 2810706 22853412 ~ 22854081 (+) True G160134
XR_002651264.1 other upstream 3041480 22622839 ~ 22623307 (+) True LOC111194779
TU216738 other upstream 3512002 22147844 ~ 22152785 (+) True G159926
TU216515 other upstream 4652993 21009302 ~ 21011794 (+) True G159748
TU217966 other downstream 1063356 26749379 ~ 26755313 (+) False LOC103021732
TU218064 other downstream 1219221 26905244 ~ 26907627 (+) True G160919
XR_002651269.1 other downstream 1423648 27109671 ~ 27117211 (+) False ccnl1
TU218548 other downstream 2936105 28622128 ~ 28624785 (+) True G161292
XR_002651275.1 other downstream 3059673 28745696 ~ 28759007 (+) False fam219b

Expression Profile