RNA id: XM_015602012.2


Basic Information

Item Value
RNA id XM_015602012.2
length 5046
RNA type mRNA
GC content 0.46
exon number 22
gene id blm
representative False

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 25845616 ~ 25864023 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCCACCAATCAGAGGAAGAGTAGACGACCCGCGGCAAACACACACTTCAATATTAGCGTGAACAATAACAGTGCGCGTGTATTTTAGTATTAGTACTGAATTCggtatctgtttattttattactcaGAATACCTTATAACAAACCGACTTTTATTCAGTTTCGGGTGAAACATACGGGATATCTGCAGCGCTGATACACACCGACAGCTAACGGTGGAAAACCGGTAGAAGCGTTAGCCGCTGAGCTAAACTAGCTAATAACAGATTTCAGCGGGAGTCTGTCTGTCAGCGGCGGTGAATATCAGTAGCGTTAGCTGTGGACTGTTTCTAACGTCAAACTAAGCTTAGCTAACTGTCCGAGTTAAGTTCTGCTTTACTGAATATCGGCATGTTTTTATAAAGCGGCAGAGCTAGCGTTACAGTTAGCTAACAGTAATGTGATATTTgagcggtgtgtgtgttctgatgtTTCTCTCCTGTCCGCGCGATGTTTTCTCTCCCtcaaaacaatttaaaagaGCAGCTGGAGCGGCACAGTAAAGTCAGCGCCGCCCAGAACAAGCTCTCTCTGGCCAAACCTAAACCCGGGGCGTTTTGCTTCAGAAAGACATCTACATCAACGACTAGCAAAGCTGCAGTCCCTGAGAAGGTAATTGGTTCTAATGTCTTTGTAAACCAGAGTGGCAATGTTCCTCGCAGCTGTGAAGTAACTAAACCTCCTCTGACATTTCCAAAGAAGCCTGAAAGAGCCCCTCCAAAATTCAACTTCTTCAGTGCACCCAGCAAACCCAAGACACAGTCCATCAACCCATCAGCCAACCCATTTGCAGTGACTAAACCTACTCTGATCCAGTCTGTCATCAAGACTTCAGCCAAATCAGAAACCATCCCCCCTGATACTCATGAAGATAAAAGTGCAGAATCACTGGTGGGTAATGACTCTTTTGCTATTCCTGTGGATGACTGGGATGACCTTGATGATTTTGAAACGCCTTCTAAAGTAAGAGCATCACAAAGCCCCCAGATTCCAGTGAAAAAAACATCTGGATTAGATAAAAACGTATCGCCTAAAGCTGCTAGTGCTAAAAGTGCTGACACAACAGAGAATGGAAGTTTGCCTGTTGGACCATCATTTGGTGCTTGTGGAGAAGCTTTGGAAATTCCAACAGACACCTCTGGTGCTGATCGACATGATGCCATCTCTGCTGGGGAGCCAGATGATTCTCCCATCAAACTAACCAAGCGTCGACTATCTGCGGTTAAGCAAAAGCCACTGCTCAGTGACAGTGAGGACGAGAGCATCACTGACAATATTAAACCTCATAATAAAGCTGATGAGAACTTCAAGTATTCAGAAGaaaatgaacaaaaatgcaaGAGTCCAAAAATCATAGACATAGATGACAGTCAGGAAGAGGATGTACTTGAGGATGACTTTGATTTTATTCCACCGTCACCCATTCCAGAAGACCAGAGTCCATCTGTTCCAACTTTGGAGAAAAGAAAACCTGACCTTATAAAAAATGAGGTGGCAAGTGTTGCTTCTTCGAGATGTTCTGTCTCAAGCCTTTCAGGGCAAAAGGTTCCTGCTAAAGATTTAAAAGGGCCTGATGATGCTCTCTTCAGTATCATGGAGTCTATCTGTTGTCTAGTGGACAAAATCCCAGAGCATGAGCTCATAGCCCTGACTTGTGGCACAGAGCTGCTTTTACAAAGAGCTCACAGGAAAAGGATTCTTGCTGAGATTGCATCATCAGGAAAGTCAGTGTCAGTCAGCGGAGCCGCTTGTGATTTCAGATTGCTGCACAGAGGAAGTTTTGGTGTTCCTACCCCTTTGATCTCAGGCAAAGGAGACAGTGCACTAAAAGGCTTTCAGTATAGAAAGTCCTTTGCATCTACAATGTCTGTAGATTACAACAACAGTGTGTTTGAAGACTCTGATTGCATTATTAATGGTGTGGAGACACCAGGTGGCTCTTGGAACCCCAACCCTTCCCTCAAATCAGCTGCAAAAGGAGACCAGGAAAACAcatgtctgaaaaaaaataatgtccacATTGAGTCATCAAGTTTGCTTTTAAAACAGACAGATGATCAGACTGAAGATCTACTACAGACCAACCTATTCTTCTCTCCCAAGAAGCGAGTGGGGACCATAAAAAAGAATAAGGAAGATAAAGTTGAGAACAACACTGCAGGGTCTGTGTATTTTGATTCAGAAATGGACACTGTGCCAGATGACTTCTACGATGATGACTTTGACATTGACGACTTCAATGAGAGCGATATTCCAAAATACAATGAAGAACCTGTGGATTCATTAGCTACAAAGAAAAGTTCAAGTGCAACCCCAAAGCCAATTTATGAAGGAGGACCCTCTAAGTCCTGTGAGAAAAGGACTGTCACCACACCCACGGCTGTTGTAAAACCTACTAAGCCAGCCTCCCCTGAGGTTACATATAGAAATCCAGCACATGACCGCTTTAGGGGCTTCAGCTTTCCTCACTCTTCAGAGATGATGAAGATCTTCCACAAGAGATTTGGTCTTCATCAGTTCCGTTTCAATCAGCTTGAAGCCATCAATGCTACGTTGCTGGGAGAGGACACGTTTGTTTTAATGCCTACAGGAGGGGGCAAAAGCCTCTGCTACCAGCTTCCTGCCTGTGTGTCTGCTGGAGTGACTGTGGTGATATCCCCTCTACGTTCTCTGATTGTGGACCAGGTCCAGAAACTTACCACATTGGATATCCCTGCGACTAGCTTATCTGGGGATAAAAGTGAGAGTGAAGCTGGACGAATCTACATGCAGCTCTCTAAGAAAGATCCTGTCATCAAACTGCTTTATGCCACTCCCGAAAagGTATCTGCAAGTGGGAGGATGATAAGTGCCCTGCAAAACCTGTATGAGAGAAATCTGCTTGCTCGTTTTGTCATTGATGAAGCCCACTGCGTCAGCCAGtggGGACATGACTTCAGGCCAGACTATAAGCGGTTACATGAGTTACGGCAAAAGTTTCCCAATGTTCCTATAATGGCACTGACAGCGACTGCCACACCTCGGGTGCAGAAGGATATCCTCAATCAGATGGCCATGAATCGGCCTCAAGTATTCACAATGAGCTTCAACAGACACAACCTTAAATATTCTGTTCTGCCTAAAAAACCCAAGAAGGTAGATGAGGAGTGCATTAACTGGATCAAGAAATATTATCCACGTGACTCTGGGATTATCTACTGCTTGTCAAGGAATGACTGTGATACCATGGCTGATAGTCTTCAGAGAGCTGGAATTGCAGCACTGGCTTACCACGCAGGGCTAAATGAcaaagacagagaatatgttcAAAACAAATGGATCAACCAGGATAGATGCCAAgtcatgtgtgccacaattgcTTTTGGCATGGGCATTGACAAGCCTGATGTGCGCTATGTGATCCATGCCAGTCTGCCCAAGTCAGTGGAGGGCTACTACCAGGAATCGGGGAGAGCAGGCCGAGACGGAGAGATTTCCCACTGTGTTCTCTTTTATTCTTACAGTGATGTTATTCGCATCAAAAGAATTCTTGCCATGGATAAGGATGGCAATCATCATTCTAGAGCCACCCACACGAACAACCTTCACAGCATGGTGCATTTCTGTGAGAATGTGTCAGAGTGTCGAAGGATCCAGCTGCTTGCTTACTTTGGCGAGAACAAATTCAATGCTGACTTCTGTAAAGAGCATCCCGAAGTCATTTGTGACAACTGTGCCAGACCACACCAATACAAAGCCAGAAATGTGACTGAGGATGTGAAGAAGATTGTGAGGTTTGTACAAGAAAACTGTCAGAAAGTTGGTGGCAGATACAgcaaatcttcacagcaaaaCAGACTCACTCTGAACATGTTGGTGGACATTTTCATAGGTGCTAAAAGTGCCCGGATCCAGACGGGCATGTTCGGGCACGGAGCAGCCTACTCCAGACACAACGCAGACAGGCTCTTTAAGAAGCTTGTGCTGGACAATGTTCTGATGGAGGACTTGTACATTACCAATAATGGCCAGGCTGTGGCCTACATCTCTGCTGGCCAAAAAGCCATGAATGTTCTAAATGGCAGCATGCAGGTGGTATTTCATGAGACTGAAAGTGCATCCAGCATCAGGAAACACAAAGCCTCTGTGATCAAGAATGTTTCTAAGAGGGAGGAAATGGTCACAAAGTGCCTGGAAGAGCTCAATGAGTTGTGTAAGAAGTTGGGCAAAGTTTTTGGTCTTCACTACTACAACATCTTCTCCACAAGCACCTTGAAAACGATTGCTGAGACTCTATCTGCTGACCCTGAGGTGCTGCTACAGATTGATGGCGTGACTGAGGACAAGCTGGACAAATACGGAGCTGAGCTTATCGAACTGCTGCAGAAATACACTGAATGGCAGCTGCCTGTTGAGGAGCAGGTTGAAAGCTCAGGGTGGATCGACACTGCACGAGACCACCTAGAGGATGATGTGTATGATGATGAAGAGGACAGCTCGTCATCTTATTTCAGGAGCAGCACAGGTCgaggagagaagaggaagaaaacgCCCTATTCAAGGAAACCCAAAAGacggaagagttacaacaaccAAAACACCTATAAAAGTGGGAACAGTGGGGGCTGGTCTTCATCTAAAGGTGGATATAAAGCTGCTGGTCGAGGTGCAGGTCGAGGAGCGGGTCGAGGCTCCGCcaggcctgctgctgctgctgcagctccagcagcaaGAAGACCAGGCGTCATGGCTCTGCCTACACCCCAGACTGCTGCACGGCCATTCCTTAAACCTGCCTTCTCTCATCTCGGCTAATTACACATTCAGTGttagatgtgtccaaattttgCCATGGTTGGATTGCTACAGGTAGCCTAGCCTTCAGCCGCCCTCACTGTGAGATGCCTCCTGTGTCGAGACTCGAATGCTGCTTTGCGGAGTTGTTCCACTTGAATTCAGTTATTGCTACCAAAGGAACATaaatacagtcaattccagTTGTGAATAAAGGTAAAATACCTTTCACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002651266.1 lncRNA upstream 2679 25838438 ~ 25842937 (+) True LOC111194781
TU217727 lncRNA upstream 106255 25738787 ~ 25739361 (+) True G160654
TU217720 lncRNA upstream 139364 25704517 ~ 25706252 (+) True G160647
TU217652 lncRNA upstream 230318 25613586 ~ 25615298 (+) True G160616
TU217651 lncRNA upstream 231688 25611716 ~ 25613928 (+) False G160616
TU217831 lncRNA downstream 82772 25946795 ~ 25947007 (+) True G160732
TU217845 lncRNA downstream 129697 25993720 ~ 25993971 (+) True G160746
TU217854 lncRNA downstream 220571 26084594 ~ 26084835 (+) True G160755
TU217918 lncRNA downstream 478305 26342328 ~ 26345682 (+) False LOC103037315
TU217921 lncRNA downstream 483614 26347637 ~ 26349594 (+) True G160803
XM_007235680.3 mRNA upstream 7550 25689253 ~ 25838066 (+) True frmd5
XM_022679777.1 mRNA upstream 7550 25689253 ~ 25838066 (+) False frmd5
XM_015602011.2 mRNA upstream 7550 25689253 ~ 25838066 (+) False frmd5
XM_022679778.1 mRNA upstream 7550 25796831 ~ 25838066 (+) False frmd5
XM_007235675.3 mRNA upstream 159593 25664786 ~ 25686023 (+) False LOC103042827
XM_007254489.3 mRNA downstream 165776 26029799 ~ 26036700 (+) True ankrd34c
XM_007254485.3 mRNA downstream 182319 26046342 ~ 26063314 (+) True idh2
XM_007254480.3 mRNA downstream 329959 26193982 ~ 26318388 (+) True sema4b
XM_022679784.1 mRNA downstream 459797 26323820 ~ 26342602 (+) False LOC103037315
XM_022679783.1 mRNA downstream 459809 26323832 ~ 26342602 (+) True LOC103037315
TU217233 other upstream 1725791 24119129 ~ 24119825 (+) True G160306
TU217011 other upstream 2991535 22853412 ~ 22854081 (+) True G160134
XR_002651264.1 other upstream 3222309 22622839 ~ 22623307 (+) True LOC111194779
TU216738 other upstream 3692831 22147844 ~ 22152785 (+) True G159926
TU216515 other upstream 4833822 21009302 ~ 21011794 (+) True G159748
TU217966 other downstream 885356 26749379 ~ 26755313 (+) False LOC103021732
TU218064 other downstream 1041221 26905244 ~ 26907627 (+) True G160919
XR_002651269.1 other downstream 1245648 27109671 ~ 27117211 (+) False ccnl1
TU218548 other downstream 2758105 28622128 ~ 28624785 (+) True G161292
XR_002651275.1 other downstream 2881673 28745696 ~ 28759007 (+) False fam219b

Expression Profile