RNA id: XM_007239647.3


Basic Information

Item Value
RNA id XM_007239647.3
length 1334
RNA type mRNA
GC content 0.50
exon number 7
gene id LOC103045417
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 37387494 ~ 37399839 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACAGACTAGTTTCTGATTCTAATCTTACAGAAGGCCGGTCAGACTGCTGCTCTGCTATGGCCACACGATGGGGCATCTGTGGCGCAGGAAAGATCAGCCATGACTTCAGCGTGGCTCTGAAAACCCTGCCAGCCAGAGAGCATCAGATAACAGCGGTGGCTGCAAGGAACCTGGAGAGAGCACAAACATTCGCTAAGACTCATGGCATCCCCAAGGCTTACGGGAGCTACCAGGAGCTTGCTGATGACCCAAATATCGACATCATATACCTGGGTGTTCTCCACACTGAGCACCTGAAGCTGGGTCTGCTGTTCCTGAATGCTGGGAGGAACGTGCTCTGTGAGAAGCCGTTTGCCATGAACCTCAGGGAGGTCAACCAGCTCATCACAGCATCCAGGAGGAGCAACGTCTTTCTCATGGAGGCTGTGTGGTCGAGGTGTTTCCCGGTGTACAGTGAGGTAGGCAGGCTGCTGGGTGAGGATGCTGTTGGAGAGGTGAAGCTGGTGAAAGCTTATTTCGGATCCCCGCAGCTGCACGTCCCCCGCTCGGTGGAGAAGGAGCTGGGAGGAGGAGCTCTGCTGGACATTGGAATGTACTGTCTTCAGTTGGTGCTGATGGTGTTTAAGGGGGAGAGACCGAGGTCTGTCCACGCCACAGGAGTGCTGCTGGACTCGGGTGTGGACGAGTCAATGGTGGTGGTTCTGAAATTTTCACGGGACCGGTTGGCCTGGTGTGCTTTCTCTATTGCTGTGGCTCTTTCCAATGATGCCATCATCACTGGCACCAAGGGCTCCATCAGGGTTGCTTTGCCCATGCATTGTCCAACCACTCTGGAGGTGAACGGAAGGCAGACTGAGTTTCCTCTTCCGGAACCTTCTCTGCCTCTCCACTTCACCAACAGCACAGGGCTGCGATACGAGGCTGAGGAGGTCAGACACTGCTTACTCAAAGGGCTGAAGGAGAGCAGCAGGATGAGTCTGGCAGATTCTCAGCTGCTCACTGAGATCATGGATGAAGCTCGGAAACAAGTGGGAGTAGTTTTTGATCAGGACAGCCGGTGAATGTCCTGTGTTCTTTTTCACCACTTCAATTCACACAGAGTTATCACTAAGAGCATCACTAGCTAACAGACCCTGTCTACCATTAACTGAAGAGCTGAAGTCCACACATGATTGTAGTTCCACTGTGAAGAGtgattatttgtgtgttttctggaaacAGAAACCTGCTGCACTGccagattattatattataatcatTCATTTTGTCTTTACCTGACTGTTGAATTAATTCTTGTTAAAGAGatttctaaattaaattaattgtctGTTTTG

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K22230 iolU; scyllo-inositol 2-dehydrogenase (NADP+)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU220921 lncRNA upstream 13289 37374006 ~ 37374205 (+) True G163095
TU220909 lncRNA upstream 15646 37366118 ~ 37371848 (+) True G163087
TU220910 lncRNA upstream 15646 37366118 ~ 37371848 (+) False G163087
TU220912 lncRNA upstream 15646 37366118 ~ 37371848 (+) False G163087
TU220891 lncRNA upstream 38434 37347432 ~ 37349060 (+) False LOC103046025
TU220944 lncRNA downstream 37729 37437568 ~ 37438049 (+) True G163110
TU221004 lncRNA downstream 148198 37548037 ~ 37548293 (+) True G163161
TU221094 lncRNA downstream 564491 37964330 ~ 37977105 (+) True G163241
TU221103 lncRNA downstream 585219 37985058 ~ 37987068 (+) True G163247
TU221176 lncRNA downstream 1271443 38671282 ~ 38672233 (+) True G163288
XM_022679913.1 mRNA upstream 34715 37287167 ~ 37352779 (+) True LOC103046025
XM_022679911.1 mRNA upstream 125509 36970710 ~ 37261985 (+) False LOC103026877
XM_022679909.1 mRNA upstream 125509 36970711 ~ 37261985 (+) True LOC103026877
XM_022679912.1 mRNA upstream 125509 36970711 ~ 37261985 (+) False LOC103026877
XM_022679413.1 mRNA upstream 947686 36391175 ~ 36439808 (+) True LOC111194719
XM_022679914.1 mRNA downstream 1689 37401528 ~ 37407914 (+) True LOC103045107
XM_022679916.1 mRNA downstream 55896 37455735 ~ 37507197 (+) True parp6
XM_022679918.1 mRNA downstream 55897 37455736 ~ 37507197 (+) False parp6
XM_022679917.1 mRNA downstream 60233 37460072 ~ 37507197 (+) False parp6
XM_022679915.1 mRNA downstream 60234 37460073 ~ 37507197 (+) False parp6
TU220729 other upstream 632807 36754185 ~ 36754687 (+) True G162964
TU219593 other upstream 4668219 32714183 ~ 32719275 (+) True G162096
TU219521 other upstream 5092465 32236316 ~ 32295029 (+) True G162032
TU219503 other upstream 5239304 32068862 ~ 32148190 (+) True G162017
TU219179 other upstream 6509182 30875118 ~ 30878312 (+) False hmgn2
TU220936 other downstream 10153 37409992 ~ 37411969 (+) True G163105

Expression Profile