RNA id: XM_007241930.3


Basic Information

Item Value
RNA id XM_007241930.3
length 1815
RNA type mRNA
GC content 0.52
exon number 1
gene id LOC103046335
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 39173324 ~ 39175138 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

acacacacacacacacacacacacttgcatccCGGCGCCCGGTCTCACCTGCGGCTCACCTGCGGCTGTAGCCGGTGCGGGGTGAGGTCGGAGGGGGGGGCGCGCTGCACGCGGCGGGTCCTCGACAGCTCGTGCGCTCAGTAAGCGAACCGTTCCGTAACGCTGCGCAACGTTTTCTCATCCCCGCCGCTCAATCATCAtaaccatcatcaccatcatcatcatcacccgCTCGCgcattattatacagtatattaaacagTTCAGATCTGATCAGCTATTAACAGAACTTTATACTGATGTGTTTGAGGCGTTTGCATGATCAGTGCTCTGATCAGTGGGTTTGATCTGGAGATGTCTGATCAATGATCATCAATAACCAGGCTTACAGCCCTGCAGCACTAACGCACACATTCCTCTGAAGACCTGCGTTTGGGAAATCTTTGCACAGGAGTGTAAAAGTTGGGCTGGGGTTTGGTTGTTCGCAGCTCGTTACCGGGGAGcagtgtgtaaatattttagagAGGATGTCACTGGATACCTGCTCGAGCTGTCAGCCATGTAAACCTCACTGAGCCCTGGGAGCTTCAGTGATCTCAGCTCTACATCTCTGAACGCTTAccgctgctgctcctgctgtgctgtgctgtggtgGATCTGCGGCGCGATGCAGCTCAGCGAGGCCGTGTGGGAAAGCTGTAGTCAGGGGTCTGTTCTGCAGCCCCTGTGGGACTATCTGCGGCTGCATCACTCCAGCACTCTGAGGTCCCCCCTGTTCCCCGTGATCCTGTCAGTGTCCTCGTACTTCGTGCTCTGCCTGCCCTACCTGCTCTGTGACGTGGCTGGAAAGAAGTGGCCGGCCATCTACAGGTACAAGATCCAGCCGGACCGGTTGCCCACCTTTACCATGATGCTCCGCTGTGCCGGCGTCACTCTCCGCAACAACGTCTTCCTGGTGTTCCCGGCGGCCGTCGCCCAGTGGGCCTGGAGGCCTCCGGTTCCTTTGCCCGAACAGGCACCCACACTGCTGGAGCTGGTTGGAGGTGTGGCAGGTAACCTCCTGCTGTTTGATTTGCAGTACTTCATCTGGCACCTACTGCACCACAGGGTACGCTGGCTGTACGTTACCTTTCACGCCATCCACCACGAATACTCCGCACCCTTTTCCCTGGCCACGCAGTGCTTGGGGGGCTGGGAGTTGGTCACTGTGGGTTTCTGGACCACCATCAACCCAGTGTTACTGAGGTGTCATTTGCTCACAACTTGGGCCTTCATGGTGACCCACGTCTACGTGTCGGTGGAAGACCACTGTGGGTACGACTTCCCCTGGTCCACGTCTCGCCTGATTCCCTTTGGCGTCTACGGAGGGCCAAGCAAGCATGACGTGCACCACCAGAAACCCAACACCAACTTTGCCCCCCATTTTAGCCACTTGGACAAACTGTTCGGCACACATTCTGATTTCAGTTTTATCAAAACTAAATGAAAGCTCAAATTACGAGAAACACATGAGAGTCACAGCCTACACTTCCTTATGAAGCAGATTGTGTTTATAATTCTCTCTTtaggattttattaaaatgtgcgGTCACAAACATCtcagaaacataaaactaaaagagCATTCGTAAGATTTCTCTAAATTTTGGGATAACAGATGAGAGCTGTGGACATTGGTTGTTGGAGGACATTTTGATGGTTTTATTCTTTTACAGAATACCACAGAAAGCTATTATACAAACTGAATGCTGAAGTGAATTTGTAGAAACTAGTTAACACGCCATAACACCAAAATGCCTGACTAAAAGCGCACTT

Function

GO:

id name namespace
GO:0006633 fatty acid biosynthetic process biological_process
GO:0016126 sterol biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004497 monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function

KEGG:

id description
K10223 CH25H; cholesterol 25-hydroxylase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU221367 lncRNA upstream 43738 39107787 ~ 39129586 (+) True G163444
TU221366 lncRNA upstream 67275 39105805 ~ 39106049 (+) True G163443
TU221341 lncRNA upstream 82191 39053394 ~ 39091133 (+) True G163421
TU221338 lncRNA upstream 130899 39036870 ~ 39042425 (+) True G163420
TU221298 lncRNA upstream 253636 38917939 ~ 38919688 (+) True G163386
TU221395 lncRNA downstream 1062 39176200 ~ 39178877 (+) True G163465
TU221404 lncRNA downstream 27195 39202333 ~ 39221652 (+) True G163474
TU221430 lncRNA downstream 74079 39249217 ~ 39249676 (+) True G163491
TU221435 lncRNA downstream 82300 39257438 ~ 39263780 (+) True G163495
TU221453 lncRNA downstream 190456 39365594 ~ 39371719 (+) True G163504
XM_022679428.1 mRNA upstream 78517 39092479 ~ 39094807 (+) True LOC111194738
XM_022679931.1 mRNA upstream 222200 38946176 ~ 38951124 (+) True LOC111194822
XM_022679415.1 mRNA upstream 227420 38944402 ~ 38945904 (+) True LOC111194723
XM_007242261.3 mRNA upstream 1227075 37944201 ~ 37946249 (+) True LOC103021700
XM_022679921.1 mRNA upstream 1337424 37589985 ~ 37835900 (+) True LOC111194820
XM_022679937.1 mRNA downstream 10084 39185222 ~ 39191405 (+) True tspan3
XM_022679940.1 mRNA downstream 96798 39271936 ~ 39337878 (+) True pik3c2a
XM_022679941.1 mRNA downstream 102341 39277479 ~ 39337878 (+) False pik3c2a
XM_007242439.3 mRNA downstream 312628 39487766 ~ 39492076 (+) True LOC103038446
XM_022679946.1 mRNA downstream 399951 39575089 ~ 39787246 (+) True reln
TU220936 other upstream 1761355 37409992 ~ 37411969 (+) True G163105
TU220729 other upstream 2418637 36754185 ~ 36754687 (+) True G162964
TU219593 other upstream 6454049 32714183 ~ 32719275 (+) True G162096
TU219521 other upstream 6878295 32236316 ~ 32295029 (+) True G162032
TU219503 other upstream 7025134 32068862 ~ 32148190 (+) True G162017

Expression Profile