RNA id: XM_007242261.3


Basic Information

Item Value
RNA id XM_007242261.3
length 1937
RNA type mRNA
GC content 0.48
exon number 2
gene id LOC103021700
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 37944201 ~ 37946249 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTCTCACCCACTAACCCACACAGACACTCCCCCCACATCCACTGACACACCGGCACTGCTCTCCTCAGCATCTCTGAAGagaaacacagcacacactcctGCGCTTCAGCTCGCCTGAAAGAAGAAGGTAATCAGCACGTGTTCCAGGAGAGCTCGAGCTAAATCAAGAGAACTAAGAAGGCAAAGGATACAACCAACAGAGCTGGCTGGCTTATGAGGCTTCCACGTAAAAGAAAGAGCAGTGCAGAAGaccagacagacaaacagaccatcagaagaacagaagaggagaaagaaaaaaaagaagttccTTCTTGACCAAAGTTGCCTCTTGAACAAAATATCACCAAAGATGTGAGGTGTTCTGCTTCTCCGTGCTCAGGTTTGAGGGAAGACCCACCAGAAAGTTAATCTGAAGATCACACCATGAGTTGTGTGCCTTTGTTAACTTCTCTCCACATCTCAAAAGCGGAGCTCTCCATGAGACGCAGCGTGAGATGGTTTCAATCAAAGCCTAACTGACTGGATAATATTTCTTGGACGAGGCTTTCAGCCTTTTATGCCTCCCCAGCCTGAACATTAATGCCCACGATGAAGATCTACAATTAAGCTAGATTGTTCATTTTATGGGACAGAAATGACCGCGCGAACGGTGGCAAAGTAAGTGTGAGCCGGCTGGATTGTGAGTAATTTAGGCGTTTAAAATGAAGGAATGATTGCAGTGTCTGTGTGCTGCGGGCACTTACTGCAGCCAGCATTTTTCCAGAGACTCATTTGGGCTAGTTAATGCTCCAGGGGGACACAGAGGCACGTTCTTATGGATCTGAGAGACGAGTGTGTCACCTTTAAGGGTGAGAAAGCTCCTGCTGACCACATCTCCAGCGCTCTGCTTGCCCCTAAGCCTCTGCCTTCCCCCAGCACAGCACTGAAACAGGGTCTTGCAGCTGGCTTTAAGAAGGTTCTTCGTACGGAGGAGGACAGCCCGAGTCCGTTTCCAGGTGTGCTGCCCGGCATCCTGGAGATGAGAGTCAAGGAAGGCAGCAAGATCCGCAACCTGATGGGTTTCGCCATGGCCCGGATGCAGAGCGAGTCTGGCGACAGCGGCCGGGCCGGGCTACGGCAGGTGGTGTTCGCAGGTTCGGGTCGAGCTGTCACCAAAACCATTACCTGTGCTGAAATCATGAAGAGAAAAGTGGGCGGTCTGTACCAGCTCACCAAACTACAGTACAAAGGCGTGCAGGAGGTTTGGGAGAGTCAGGAGGGAGGCGAGTCAGAGATGACCGTCCACAGGACCGTGCCCTCCATCAGTATCCTTCTGTCCAAGGACCCTCTGGACCCACTGGAACCAGGATACCAGCCCCCTGAGACCCAGTACGCTCTGTGGGAGGAGAGGGGTGGTGCGGACGTGCTACAGCCAGGAGAGAAAAGACCGTTTAAGAACAATATCAGTGAAACACATTCGAAACGATTCTGTCCTCAAGGTGGGGTCACTCTTTGAACACGTTTGAACaatggttttgttttttaagatctttttaatccatgtttttttttcactccacTGTGAATTCTATTGTGTTCCATAAAACAGCTAACAGTAGAAAACTGTTCAAAACTATTCATattaatgtacagtaaagtttaaATCTCCTCCTCTTATAAACATACCATTCAAGAGTTCCTCAAGCCTCAAAAGTCAGTCATGGAGTTGAGCACCAGAACTACGTTTCTATTTGGTCTAGATCAGTTATTCTAATCACACGTACTGCTGTGACACTGTGAATGCACAACCTCGAGGAGTGCTCCATTACTGCTATAACCTGATAAACCTTTTAAAGAGGTTGATGGCTTCATTTGTAGCCAAGCCACAAATGGCTTCActcataataaacaaaatacaaagtaaattcagcacaacacaatGTCCTCATCCCTCA

Function

GO: NA

KEGG:

id description
K14525 RPP25; ribonucleases P/MRP protein subunit RPP25

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU221004 lncRNA upstream 395908 37548037 ~ 37548293 (+) True G163161
TU220944 lncRNA upstream 506152 37437568 ~ 37438049 (+) True G163110
TU220921 lncRNA upstream 569996 37374006 ~ 37374205 (+) True G163095
TU220910 lncRNA upstream 572353 37366118 ~ 37371848 (+) False G163087
TU221094 lncRNA downstream 18081 37964330 ~ 37977105 (+) True G163241
TU221103 lncRNA downstream 38809 37985058 ~ 37987068 (+) True G163247
TU221176 lncRNA downstream 725033 38671282 ~ 38672233 (+) True G163288
TU221184 lncRNA downstream 791470 38737719 ~ 38740775 (+) True G163296
TU221186 lncRNA downstream 796546 38742795 ~ 38744936 (+) True G163297
XM_022679921.1 mRNA upstream 108301 37589985 ~ 37835900 (+) True LOC111194820
XM_022679918.1 mRNA upstream 437004 37455736 ~ 37507197 (+) False parp6
XM_022679415.1 mRNA downstream 998153 38944402 ~ 38945904 (+) True LOC111194723
XM_022679931.1 mRNA downstream 999927 38946176 ~ 38951124 (+) True LOC111194822
XM_022679428.1 mRNA downstream 1146230 39092479 ~ 39094807 (+) True LOC111194738
XM_007241930.3 mRNA downstream 1227075 39173324 ~ 39175138 (+) True LOC103046335
XM_022679937.1 mRNA downstream 1238973 39185222 ~ 39191405 (+) True tspan3
TU220936 other upstream 532232 37409992 ~ 37411969 (+) True G163105
TU220729 other upstream 1189514 36754185 ~ 36754687 (+) True G162964
TU219593 other upstream 5224926 32714183 ~ 32719275 (+) True G162096
TU219521 other upstream 5649172 32236316 ~ 32295029 (+) True G162032
TU219503 other upstream 5796011 32068862 ~ 32148190 (+) True G162017

Expression Profile