RNA id: XM_022679481.1


Basic Information

Item Value
RNA id XM_022679481.1
length 2701
RNA type mRNA
GC content 0.56
exon number 22
gene id lrch3
representative False

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 2671503 ~ 2720959 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGACAGGCGGGGAGATCAGTGGGAGTTTGCTGTGTAATGGCGGCCTCGGTGTTGCTCTCTGCGGAAAGCACCGTGCCCGCTTTCGCTGTCGGTAATCCCGGTGCGGCCGGGGCCGCCGCTAACGGACTATCCGTGCCGGGACCCGCGTCCTGGAACCGGTCTCTGGACCGAGCTTTGGAGGAGGCCGCGGCCACCGGCAGCCTGAATCTCAGCGGCAGGAAGCTGAAGGAGTTTCCGCGGAGCGCCGCCAACCACGATCTGACCGACACCACCCGGGCCGACCTGTCCCGGAACAGGCTGTCGGAGCTGCCAGTGGAGGTCTGCATGTTTGTGTCGCTGGAGAATCTGAACTTGTACCAGAACTGCCTACGCTCGCTACCTGAAAGCTTGATCAATCTACAGGCCCTTACGTACCTGAATATCAGTCGGAACCAGCTGTCCACCCTGCCCGCTCATGTGTGCAGTCTGCCTCTGAAAGTGCTGATTGCCTGCAACAACAAATTAGTGTCCTTGCCCGAAGAGCTCGGACAACTCCGTCAGCTCACTGAACTGGACGTGAGCTGTAATGAGATCCAGACTCTGCCTTCCCAGGTCGGCCAGCTCGAAACTCTGCGGGATCTGAACATCCGCCGAAACCACCTTGTTCGCCTGCCTCCTGAATTGGCTGAGCTGCCACTGGTGCGCTTAGATTTCTCCTGTAACAAGGTGACGTCAATCCCAGTATGCTACCGCAACCTACGGCACCTCCAGAGCATCGTGCTGGACAACAATCCCCTCCAGAGCCCTCCTGCACAGATCTGTATCAAGGGGAAGATCCACATATTCAAGTATCTGAACATGGAGGCCTGCAAAATAGCTCCAGACCTCCCTGACTATGACAGACGACCGCTTGGCTTCGGATCTTGtgtggaCGAGCTGTATCCAGGCCGGCCGTACGGAGCTCTGGACTCTGGGTTTAACAGTGTGGACAGTGGAGACAAGAGATGGTCTGGCAATGAGCCCTCTGATGAGCTGTCGGACCTGCCGCTGAGAGTGGCAGAAATAACCAAAGAACAAAGacaaaggagagagagggaacggGACGAGCACAGGCCAGGCTCGCTCCTGGCCAATGGAACATTGGAGACAGAGCTTGAGCAGATAGACTTTATTGACAGCTGCACAGGagaggaagatgaggaggatGGAAGAAGTCGAGGAGGGGAGCCAGTCAGCCTTAGCTCCCAGTTTATGGCATATATTGAAAGACGAATAACCAGAGAGGGTTCGCCAGTTAAGGCCAGCTACTCCAGAGACGGTAGAACTGATGATTCCAGACGCCAGGGGTCCTTACACAATCGTGCAACAGACACAGCCGGCACTCTGTCCTCCCCAACTCATAATCAGCGGCAGATATCGGGCTCTGGCTTGGGGTTGGAGCGCATGCGGAGAGAAGCCCAACTCGCAGCTCAGCGGTACGAGGAGGAAAGACAGAAAGCAAGAACAGCACAGAGAGACGCTGTTAGGAGTTATGTGAAGcaTAAATCAACTCAGAGTCCCACTAAACTCAGCCCTACAGACAGTGAGACCCTGTACCCCTCCAGACGCTCCACCCATACAGATGACTCCGCCCTCTTTATGAGTGAGTTCGAGCCCTTAATGGTGTTTGAAATAGACATAGACACCAACACTATAAAGAAGAGGCCAGGCCCTCCTAAGCAGTCAGTCACTGGTAACCCAGTGGATGGGTGTGTGTCTCCCACCGCAGACACTGGCACCTCTTGCAACTCACTGCAGCAAGGAGAAGAACGTGCCTCGCTCTCCCCAACAGCCCTCCAGTCACCTACTTACCCCAGCCCTGCTGCCCCATCTGCCTGCCGCGGAGCCAACCAGCGTCCTGAGAGCTTTCTCTTCCGCCTCAGCCAAAGAGAGGACAAAAAGAGAGGAGAATCAAGGCCTGAAGAAGCGACTCCTACACCATCTCCAGTTTCGGGTCCCACAGGAGAAGAAGCTGAACTGGTGGAGCATCTGAGAAAGAACATTGAGTCTCGGTTGAAAGTGTCCTTGCCCAGTGACCTCGGGGCTGCCTTGACGGACGGGGTTGTGCTGTGTCACCTGGCTAATCACGTCCGGCCTCGATCAGTACCCAGCATCCACGTGCCCTCACCTGCAGTGcccAAACTGACGATGGCCAAGTGTCGTAGGAATGTGGAGAATTTTCTGGAGGCATGTCGCAGAATTGGGGTCCCTCAGTCCCAGCTGTGTCTGCCCCTCCACATCCTGGAGGAGAGGGGTCTGCCTCAGGTGGCCGGGACGGTGCAAGCTCTTCTGGATCTGGCCCCACCGAAACACACACCCTCACCCAGCACAGCCCCAGCCAACCCCATCACTGCCTGAACCCTCGCCATTTAGGACctccacacacagacagacacacacatatacatacacacatatatacatacacccacacacacagactctcaGATCTGTTCCCGTGTTTTATTGGAGAGCTGTAGAGACCTCTACACCCCATCACTGGACCACTGGTCCGCTGGTCACCTCCCACCTGctctgaccacacacacacacacagcaccggCTGACCCTCACAGCTAACCAGCTAACGGAGGAAGAGGAACAGGAAGAagaagtgtgaaaaaaagaCTGTGGAAACAAAAGAGGAGTGGAAAGTCGCTGATGTCCGATTGCTGCACACACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU211238 lncRNA upstream 36895 2634162 ~ 2634608 (+) True G155757
TU211231 lncRNA upstream 96121 2575080 ~ 2575382 (+) True G155750
TU211196 lncRNA upstream 724336 1926434 ~ 1947167 (+) True G155722
TU211199 lncRNA upstream 729328 1926434 ~ 1942175 (+) False G155722
TU211198 lncRNA upstream 740830 1926434 ~ 1930673 (+) False G155722
TU211248 lncRNA downstream 13503 2734462 ~ 2734664 (+) True G155765
TU211271 lncRNA downstream 49131 2770090 ~ 2770853 (+) True G155785
TU211278 lncRNA downstream 58628 2779587 ~ 2779883 (+) True G155792
TU211279 lncRNA downstream 59169 2780128 ~ 2780371 (+) True G155793
TU211296 lncRNA downstream 106637 2827596 ~ 2828274 (+) True G155809
XM_022679476.1 mRNA upstream 765789 1692598 ~ 1905714 (+) False tspan4
XM_022679477.1 mRNA upstream 765789 1693672 ~ 1905714 (+) False tspan4
XM_022679475.1 mRNA upstream 765789 1755952 ~ 1905714 (+) True tspan4
XM_022679474.1 mRNA upstream 998309 1662978 ~ 1673194 (+) True LOC103036983
XM_022679961.1 mRNA upstream 1012541 1652654 ~ 1658962 (+) True LOC103036673
XM_022679486.1 mRNA downstream 71080 2792039 ~ 2806754 (+) True parp9
XM_022679487.1 mRNA downstream 71671 2792630 ~ 2806754 (+) False parp9
XM_015606067.2 mRNA downstream 161868 2882827 ~ 2938070 (+) True LOC103044837
XM_007230030.2 mRNA downstream 221815 2942774 ~ 2963551 (+) True ndufa10
XM_022679492.1 mRNA downstream 890059 3611018 ~ 3614491 (+) True LOC111194753
TU210855 other upstream 1402124 1265820 ~ 1269379 (+) False G155491
TU210857 other upstream 1403308 1265820 ~ 1268195 (+) False G155491
TU210859 other upstream 1403308 1265820 ~ 1268195 (+) False G155491
TU210867 other upstream 1456840 1203741 ~ 1214663 (+) False LOC103036073
TU210384 other upstream 2518240 149347 ~ 153263 (+) True G155206
TU211262 other downstream 17402 2738361 ~ 2755112 (+) True G155776
TU211750 other downstream 2436195 5157154 ~ 5157400 (+) True G156188
TU212485 other downstream 4651417 7372376 ~ 7431568 (+) False LOC111194759
TU212490 other downstream 4666543 7387502 ~ 7404556 (+) False LOC111194759
TU212659 other downstream 4879608 7600567 ~ 7606668 (+) True G156840

Expression Profile