RNA id: XM_007243993.2


Basic Information

Item Value
RNA id XM_007243993.2
length 4644
RNA type mRNA
GC content 0.46
exon number 1
gene id LOC103030327
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 4916228 ~ 4920871 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tgtgttagacagtgtgttggagtgtgtttgtgtgcctaGCCTATACGAGTAGTGAGTAGTAGTACGAGTGTGTGTTCACTTTTTTTCAAGCGcgattttttctttctcaaacAAAAAGCACTCCTGCACGCGCGCGCACGGGGCAAGGCACtctttctgcctgtctgtctgcatgCATGTCTCTGCATGCTAAAGTGGACGACGTATTTTAGACGTTTAGAGCTTTTGTTGTCGGAGTTTTTGGCTCTTCCGTTACTTTTTACGCACCATCTTTTCACTCCGCGTCCAGCGTCCACCCGTCTTTCTCCGCCGCGTCACGATGCGCTCtggtgaagaagacaaagagaaGAAGACagcagaggcagcagcagcagctgagatGTTTTGAGAGAAGAGAAAGTTTCAGTGTATTCCTCTTCGAGAccagagaaggaggaggaggaggaggagggggcagaagaagaaaaaaaggagagagcaGGAACCAGAAGGGAATGAATCTGTGCGTAAAGGAGAAAAAAGTGCGCGTAATCTGGAGGAATTAGGAAATACGAGGTTCCATAAGACTTCCATCGTCCaagatcagcagcagcagcagcctggacTTTTCAGGGGAAGGAGGAACCTCGCggttctcacactctctccttCTTCAGCTCTTCCTATCtatcttttaatttaatttttgaaTTGTCCTCTTTGGAGAAGAGCACCAGAACAACCATCAAGCTGGCTCACTCTCTTCTCAGCCAAGCCGTCCCGCCAGCCGCGCTTCACCCTCTTTGGAGGACTGTCAACAGCAAGAGGATGGCATCAGAGCTGGCGATGAGCAGCAGCTCCGACCTGCCCACCAGTCCCCTGGCCATGGAATATGTTAATGACTTCGATCTGATGAAGTTTGAGGTGAAGAAAGAGCCCGTGGAGCCCGAGCGCGGCAGCTTGAGCCACCAGTGCAGCCGCCTGCTCGCCGGGGGCTCCGTGTCTTCCACGCCGATGAGCACACCGTGCAGCTCGGTGCCTCCCTCGCCGAGCTTCTCGGCGCCCAGCCCGGGCTCCGGGAGCGAGCACAAGAGCCACTTGGAGGACTTTTACTGGATGACGGGCTACCAGCAagcccagcagcagcaggcgcaagcccagcagcagcagcagcaagcagctcagcagcagcagcaagcagcccagcagcagcagctcaaccCGGAGGCGCTGGGCTTCAGCCCCGAGGACGCGGTGGAGGCGCTGATCAGCAGCGCGCACCAGCTCCAGCCCTTTGACAGCTATGCCAGGGCGCAGCAGTTCGCCAGCGCGGCCGGCCCGGGAGGCGCCGTGGCCGGGGACGACATGGGCTCAGCCGCCGCCGTGGTCTCGGCCGTGATCGCCGCCGCTGCAGCGCAGAACGGTGCccctcaccaccaccacaaccatcaccaccaccaccaccacccgaTGCACCACCACGCGTCCTCCAGCAACAGCCCCACCGCCGCCGCtgcagctgcaggaggaggtggaggaggacaccaccaacaccaccaacaacagcaacacagccaccaccaccagcagcagccagGCCAGGAGGACCAAGCCGGCTCCCTCCACgcgcaccaccaccaccagcaccaccaccaccaccagcacggCTCCGACGACCGCTTCTCGGACGAGCAGCTCGTCACCATGTCCGTGCGCGAGCTCAACCGGCAGCTCCGCGGCGTCAGCAAGGAGGAGGTGATCCGGCTGAAGCAGAAGCGCCGCACGCTGAAGAACCGCGGCTACGCGCAGTCCTGCCGCTTCAAGCGCGTCCAGCAGCGGCACGTCCTCGAGGGCGAGAAGACGCAGCTGCTGCAGCAGGTGGACCACCTCAAGCAGGAGATCTCGCGCCTGCTGCGCGAGCGAGACGCCTACAAGGAGAAGTACGAGAAGCTGGTGGGTGGCGGCGGCGGTGGGGCTGGAGGTGGAGGGGGCTTCAGGGAGAGCGGAGCGAGCTCCAGCAGCGACAACAACCCCTCGTCTCCAGAGTTTTTCATGTGAGTCAGTCCTGCTGCACACCACCAagtctgaaagagagagagcgagagagagcgcgagagagtgagagagagtgaaagaaatagagagaaaaagagaaagatactttctttaaagtagcagattttatattttttattttttgatttttgtttttttctcctgatCAGTACAGGCCTGGCAGTCTGTctgttgttaatattattattattattaatattattattattattagtgttgttatatatttttctgtttgtgtggAGATGGAGAGACTCaacttttacaatatatatattctttttattttttatctatatatttccCTTCCCAACAAATGCAAAAACCCACCCAAAGCCAAGCCATCCTCGCTTAAACCCACACACAAACttttttgagtttgagttttttttttttttttaagtcatttccTTTTAATTTTGAAACTCTTGAAAACTTGCCGACTTGCagtgttttcttcatttttttgaatgggattgctgtttttattccctcttttttgttgttctttgttttaaaaaaagcatgcaTCATCCACATGCATCAATGGTCAAGCAATGCTcatccttttttgttttctttttgcatcACCATTTTTGTCCTTGCTTTAAATTCCcaacccaagaaaaaaaaaaactcccccaAAATTCAGCTCCCCTTACTTTGTTTCTGTGGCACTTTTTCCTTTTcgttttttgttggtttgttttccCCTGAAGTTCCAAAGAATCACACTTCTAAGGACCTGCAGCTTCCCCCATCACTTTTGATCTTCCCGAGATCATGCCAATCATCTCCTCAATCATCCCGATTGATCATCTCATGAGTCCTGCTTGCTTGCTGTTTTGTTCTCTGTTTAACGAAAAGAAGAAAacgttaaaaaaaagacaagaaaatgaCTGTTTACGAACAACTTTCAAAGACAATGCTTTAATacgaaaatgaaaaaaagaaaagaaacaaagagcagagagacagaacgagacaaaacgagagagagagagacaatatcgtattcttattattatcatcGCCTGCATGCTGGACATGTACGGTTTTCTTggttttctttttccttattttgtgttttttgtttttttattgtttattttgcttgAGAACTGAACAGTTTGTACTCGGATAACTCCAGCATGGCATTCATCCTCTTCCTTTATTTGCCGGCTCACTTTTTTGCCTGGAATATACGCGCAAAAAAGTGAAAGAGCATCCCTCAAACCAACCtataccaaccaaccaaccaatcatcccaccctgctgaaaaaaagaaggagagTTTAAAACAGGCTGAAACTGGAAGCGATGTTTGAAGGGACACGGACTGTGCTAAAGAGGAGCTCCGTCTCCGGGACTTTTAAAATTGCTTTAAAGTTACTTTGTTGGCTCTTTACTCTTACTTTAccactgtgtgtaataaagcAAACAACGTGTTTTATATGTGAAGCATAAGAACAGTTGTGTTGTTATCTGTGAGATCTGAGTTTGACGGTCAGTGTAAGCTATGCTCCAGgttgataatgataatgataataacgaTGGTGTTGTTTATGAAGATGAAGATAAAGATTCTGATGCTGAAGATATACAATCTAAGATATGAGATATGACGGTGGTTTTTAAGGGTTTAGACTTTCGGGGTTCACATCCTATGCACTTGCCCATACAATTGACAATTGATTCCCTGATTCCTGATTCTATAGTGTTAACCAATATGTTAGCCTATGCTGGAAGGACCCAAAGCGTGTACAtgtctgtgtgtataagtgtgtataataTTACTACACAGCAGCAGGAGTGTTTGTTAGGATGCGGACTGGAtgccagcttttttttttttagcagcatGTGCTTGCCATGAACACAGCAGCAGTTTGACAGATGTAGCCCCCCCTCCTCTCTTCTTCCAGCCTACCActgactgtattaaaaaaataccaaaGTATTAAAAGCAAAAGAAGAACTGGGAAACGCTtgggagcgttttttttttttgcaaaatacagatcttaaacttaaacttatttGGACTGAGTTGCACTAAAATGTAGCCTGTAGCTAAtcacacagtatatatatatataatatatatatatatataaatagatttaTATATGTATCACACGGTGGATTCTTATCTTAGAACGCTAATTTAAGATTGAGACATATCTCATGGCATTGCTGGAGAATTTATGAATGCAatcgtattattattattattacgttACATTGTCAAAGCAGGACTagttcctttcttttctttttttgttgtggaAAGACGGATTCATTATTTACGAggcaataatataataatcaataatgtcTGGACATTGTTTTATAGTCAGGGATTGAAACCCTGCttgtataaaaatgaaaaaaatggggATATACCATTcatcaataattttttttaagtatgttaattaaaaaatttctcatatatatataaaaatatatatattttgctgtgCAAAATTATTTCACTCACTAACCATATGTGATGTTCATATGTGCTTATCTTCATTTCATACGATTATATGATAtgcaataaaaatgcaaattggGCTTCATAAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU211714 lncRNA upstream 27227 4888596 ~ 4889001 (+) True G156153
TU211712 lncRNA upstream 47873 4868090 ~ 4868355 (+) True G156151
TU211673 lncRNA upstream 268205 4647628 ~ 4648023 (+) True G156121
TU211670 lncRNA upstream 278938 4622628 ~ 4637290 (+) True LOC103030011
TU211658 lncRNA upstream 365361 4550240 ~ 4550867 (+) True G156107
TU211718 lncRNA downstream 32203 4953074 ~ 4953274 (+) True G156157
TU211726 lncRNA downstream 90955 5011826 ~ 5012075 (+) True G156165
TU211746 lncRNA downstream 200133 5121004 ~ 5121206 (+) True G156184
TU211751 lncRNA downstream 261663 5182534 ~ 5183300 (+) True G156189
TU211752 lncRNA downstream 290084 5210955 ~ 5211434 (+) True G156190
XM_022679967.1 mRNA upstream 177823 4678203 ~ 4738405 (+) True LOC103037478
XM_022679965.1 mRNA upstream 282528 4575668 ~ 4633700 (+) False LOC103030011
XM_022679964.1 mRNA upstream 405688 4296319 ~ 4510540 (+) True LOC103029469
XM_022679496.1 mRNA upstream 792748 4008326 ~ 4123480 (+) True LOC103036857
XM_007244015.3 mRNA downstream 600815 5521686 ~ 5524043 (+) True LOC103036856
XM_007244014.3 mRNA downstream 615863 5536734 ~ 5597788 (+) True cdyl2
XM_007244011.2 mRNA downstream 692090 5612961 ~ 5619291 (+) True cenpn
XM_007244010.3 mRNA downstream 700349 5621220 ~ 5630190 (+) True atmin
XM_022679500.1 mRNA downstream 718377 5639248 ~ 5641113 (+) True LOC103034771
TU211262 other upstream 2161116 2738361 ~ 2755112 (+) True G155776
TU210855 other upstream 3646849 1265820 ~ 1269379 (+) False G155491
TU210857 other upstream 3648033 1265820 ~ 1268195 (+) False G155491
TU210859 other upstream 3648033 1265820 ~ 1268195 (+) False G155491
TU210867 other upstream 3701565 1203741 ~ 1214663 (+) False LOC103036073
TU211750 other downstream 236283 5157154 ~ 5157400 (+) True G156188
TU212485 other downstream 2451505 7372376 ~ 7431568 (+) False LOC111194759
TU212490 other downstream 2466631 7387502 ~ 7404556 (+) False LOC111194759
TU212659 other downstream 2679696 7600567 ~ 7606668 (+) True G156840
TU212948 other downstream 3649059 8569930 ~ 8570877 (+) True G157055

Expression Profile