RNA id: XM_007243994.3


Basic Information

Item Value
RNA id XM_007243994.3
length 2183
RNA type mRNA
GC content 0.48
exon number 9
gene id irf8
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 6100753 ~ 6111006 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGTGAATTGATTCTGAAGGTAAAATAAAGGTGCTGTGAATATTTACAGTAAAGGTTTTTAAATGAGAGAGTAAATCAGCTGGATCCAGAGGCTGGTTAGATGAGTACATGCTGAAGGTTGTAAAGTCCCTTTTCCATGGAAGTGAAGCCCACCCCAGCCGCCTGAGAACCTCCGACTGAGGGAAAGGCGATTTCTTGTAAATGCCTCCGCTTCTAAGAAGTTTTCCGTGCTGGAGGCGTCACGTCGGTGGGCGTGTTTTGATTGGATGCGGGGGAGCGGGGGCGTGGCCACGAGCTCCATTCACACAAAATGAACAGACATACTTTCTTTCCCCCAAAATAAATCTCCTCAGATCTTCAGATCAGCAGTCAGTGCAGAGCATAGTGATCACTGAGCCGAGATGAATCCAGGAGGGCGCAGACTGAAGCAGTGGCTGATCGAGCAGATCAACAGTAATATTTACTCTGGGCTTCTGTGGGAAGATGAGTATCACACCATGTTCAGAATACCGTGGAAACACGCTGGAAAGCAGGACTACAACCAAGAGGTGGATGCGTCCATTTTCAAAGCTTGGGCGGTGTTTAAGGGAAAATTTAAAGAGGGAGACAAAGCTGAACCGGCTACATGGAAGACCCGGCTGAGATGTGCTCTGAACAAGAGCCCCGATTTTGAGGAGGTGACAGAACGCTCACAGCTGGACATCTCAGAGCCCTACAAAGTGTACAGGATTGTCCCCGAGGAGGAGCagaagtTGTGTAAAAGTGCCACCACTACCTTGAACATGAGCTGCCCACCTGAAGGGTCTGAGATGGAGTGCAGTCAAGCAAATACAGACCTAGACAGACTCATTAAAGAGACACCAAGCGACGAATACATGAGCATTATCAAGAGGAGCCATTCTCCAATAGATGAGAACAGCAACCTGCAGTCCCCGCAGGAGTGGTGGCACCAGGGCTCGCCCAGCGctctCCCTATTCTGCAAGATCCTTCACCAATAAATACCTTTAATGCAGCTTTCTCTCAGATGATGATCTCTTTCTACTATGGAGGAAAGCTAATGACCAGCACCCTGATCAGTCATCCAGAAGGCTGTCGGATCTCTCCCGGTCAGCCTCCCATGTCCAACCCCATGGTGTATGGCCCAGACACCCTCCAGAACGTGCGCTTCCCACCCGTGGAGCTCATCGAACACGAGCGGCAGCGCCACATCACCCGCAAGCTCTTCGGCCACCTGGAGCGCGGCGTGCTGCTGCGGGCCAACCGGGAGGGCATCTTCATCAAGCGCCTGTGCCAGAGCAGAGTGTTCTGGAGCGGGCAGGACGCACAGTACGGCCCTGGGCCCAGCAAGCTGGAGAGAGACGCTGTGGTGAAGATCTTTGATACTAGCCGCTTTCTTCATGCCCTCCAGCTGTATCAGGATAATCAGTACCCAGCTCCAGATCCTACAGTCTCTCTGTGTTTCGGGGAGGAGTTCAATGACTTCAGCACAGCCAAGACCAAGCTAATTATTGTGCAGATCACAGCAGTGAACTGCCAGCAGCTGTTAGAAGCAGTGATGACCAGGAGAGCTCAGTACAGCAGCGGCAACCTGGAGATCTCTGACGAGATAGCCAGTGACCAGATGGCTCGCATTTACCAGGACCTGTGCAACTACCCCTCCCAGCGGGCACCCTGCTACCGGGACAACCTGCCCATCACTGCCTGAAGCACTGCCCTGAGATCAGAGCACATCCAGAGCAACTTCACAAACTGACTTAAAGtgacttctttaaaaagtagaCAGTAAAGAAGAGCAGCAGACTCGTAGAAGACTCTTTTACATTTCTTCACAACACGTCTGTAATCATGGCAGCAAGAAGCATTAGCACAACTGCAGTTAGATAAAGCTACATGTAGCACAGTGTTCTCTCAGGTCCTCAGAATGGACAGCAGATTAGAGATGAATCTGAAAATGTTCTCagggaaactttttttttttttttcagttttaaagctTAAAATTTGACAAGAATTCTTGCAAGATGTTTGTGGAATTGCATATGTGACCAATGTATTACGTTTatcctttgtgtttttttttttttacttttctgtaTGAGAGATTGTTTGTTGTGAGATGATAGGTTTTACTATCctggcatttttttattattactcttgaaataaacatttttgtacaaata

Function

GO: NA

KEGG:

id description
K10155 IRF8; interferon regulatory factor 8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU211916 lncRNA upstream 38756 6056669 ~ 6061997 (+) True G156326
TU211922 lncRNA upstream 48371 6050480 ~ 6052382 (+) True G156331
TU211812 lncRNA upstream 452179 5645881 ~ 5648574 (+) True G156233
TU211802 lncRNA upstream 489480 5602332 ~ 5611273 (+) True G156225
TU211788 lncRNA upstream 499094 5601105 ~ 5601659 (+) True G156215
TU211931 lncRNA downstream 6139 6117145 ~ 6117589 (+) True G156340
TU212013 lncRNA downstream 195719 6306725 ~ 6307420 (+) True G156395
TU212015 lncRNA downstream 197227 6308233 ~ 6308561 (+) True G156397
TU212017 lncRNA downstream 198366 6309372 ~ 6309620 (+) True G156399
TU212022 lncRNA downstream 202946 6313952 ~ 6317024 (+) True G156402
XM_007243995.3 mRNA upstream 5085 6067215 ~ 6095668 (+) True LOC103030962
XM_007243996.3 mRNA upstream 35220 6063252 ~ 6065533 (+) True LOC103031281
XM_007244000.3 mRNA upstream 58250 5703096 ~ 6042503 (+) True gse1
XM_015604469.2 mRNA upstream 58250 5703096 ~ 6042503 (+) False gse1
XM_007244001.3 mRNA upstream 58250 5703122 ~ 6042503 (+) False gse1
XM_007244016.3 mRNA downstream 190842 6301848 ~ 6305572 (+) True foxf1
XM_022679503.1 mRNA downstream 213815 6324821 ~ 6363149 (+) False dbndd1
XM_015604453.2 mRNA downstream 213818 6324824 ~ 6363149 (+) True dbndd1
XM_022679507.1 mRNA downstream 371813 6482819 ~ 6488287 (+) True gas8
XM_007244032.3 mRNA downstream 620164 6731170 ~ 6759468 (+) True LOC103042367
TU211750 other upstream 943353 5157154 ~ 5157400 (+) True G156188
TU211262 other upstream 3345641 2738361 ~ 2755112 (+) True G155776
TU210855 other upstream 4831374 1265820 ~ 1269379 (+) False G155491
TU212485 other downstream 1261370 7372376 ~ 7431568 (+) False LOC111194759
TU212490 other downstream 1276496 7387502 ~ 7404556 (+) False LOC111194759
TU212659 other downstream 1489561 7600567 ~ 7606668 (+) True G156840
TU212948 other downstream 2458924 8569930 ~ 8570877 (+) True G157055
TU213377 other downstream 3829823 9940829 ~ 9941805 (+) True G157383

Expression Profile