RNA id: XM_007243995.3


Basic Information

Item Value
RNA id XM_007243995.3
length 2109
RNA type mRNA
GC content 0.40
exon number 7
gene id LOC103030962
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 6067215 ~ 6095668 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCTCAATATAATCATTTTTAGCTGAAGTCCGGAAGCTGGAGTGAGGCTTAAAGGGCAGATCAGAAAGGAGGATACCCTTCATAACCCTAGAGTGTAGATTTTATATCAGTATATATCAGTATAAGGCGTTTTTACTAAGTTTAGTTTAGAAATGCGACAGCGCCTGTAATGTTGTTGTATGCTAACTAAGGTGATCTGTGGGCTAGCCTTCATGTGAAGCAGAGGGAAAAACGTCAACACCGAGAATAGTTGTTGATGTGAAAAGTCTCCACCACAGTCATGGGGAACGGAATGAATAAGGTCATTGATGGCCTGTATTTAGGAAACGTACGAGACTCAGAGAACAGAGAAAGCCTGTCTCAGAAAGGGATTACCCACATCCTCTCTGTGTACAACAATGCCAAGCCTGTGCTGGAGGACATGACCTACCTTTGCATTCATGCAGCAGATGCCTCTAATCAGAACTTATTACAGCATTTCAAAGAGTGTATCCGGTTTATTCACGAGTGCCGATTGAATGGTGGAGCCTGTCTGGTTCACTGCCTTGCTGGAGTGTCCCGCAGTACTACAATGGTAGTGGCCTATCTGATGACTGTCACTAATTATGGCTGGGAGGACTGTCTGTCTGCGGTTAAGGCTGTGCGCTCCTTTGTAGGCCCTAACTATGGCttccagcagcagctgcagcagtacCAGATGACCCAAGTCTCAGAGtatcgtACTTGGCTGCGAATGACCTACAGATCCAGTACATTCAGAGATCAGGATCAGGTGGCAGCCTTGTTGGTCCAGTATGCAGAACAGCAGGCTCAGGAACGACAGAGACGAGGAAATCACGACTGGATGAACCAGTCCACCAGCGTCTACTCTGTGCCATATGACCGTTACAGCAGCTCAGGCTTTAATAGATGAGTGCTTTTTTCAGCACCCCATCTACACCCATCTACACACACCCCAAACCCCACAACCCATTAAGACCCCTCAAAAACTCATCCCTGTCACTTTACCTTACTAATCACTCAGACTTATAATGGTTGCTGCTAGGGGTACACAAAAGTCATAGTTTGGTTTACATTGTGTTTTAGACATCATGGTTTAGTTCAAGTACGGTATAAAGCACaaaacaatgacaaaaaaaatatataagactattttttatttatttaatataaacagaCTTACACTTGTGTAAGTTATAGTCGGCTCCGTCTAGTGCTGTATAATGCCCCACTCAGGTAGTTATAACAgatattatgtttattaaaatataatcaataaaataagatGCTAAAGCCATTGTATATGTCaaatatttgttcattttcCATCATTTTAAATCCACAGGTAAGAGCAGTGACagataaagtttaaagaaaaatgtgtgaGTCACTCTCTCTATATGTGGTAACAAGAGGCATAGAGAATAGAGAGGGAAAAGGAACAGGAGGGGTACAGCAACACTATCTATAATCTATCTAAACCACTACAGTTAACACACAGTGAAATGCCATTCCAATAGCTTACAGTTTATGGAATTGCTGTATTTACCCCAATAGCAACGTATCACCCTGAACCATGACTCCTGTATCATGCTAGTTCACTACAAATATACATACCCTTACACCTCTAATTGCTGCTTACCTGTAATTTAATCTACATCAAGCTTAGCTGCTTAAACTAGAATCAGCACTGCCACTTGCACTAGCTCTTAGTTTAAGCCTTTAAATACACTGGCCTGAAATACCATATAATTTAACCCTTGAATATAAAAGCAGAGAACATCCAAACCGTTTGCTTTAAAGTTAGTAGATCCAGGAAGACTACCTTAAAAAAGCCAATATGCAACTTTGGGTGATTAGTGACTGAATTTATAATGAGtgttttattggtttgttttggttttccCTTTTTGTGCACAAGGACGAGCGATTGAGAGACTgacttgttgtttttaaagaagCAATGGAACCCAGCCCTGTTGTTGAACCTAAAATGGTACAAGCTCTGTTGTCAGAGtacactgtaaatgattcaCACCTTTATAGTACAGAAATTTGTACTTCTGTTCTGTGCAAATCTTATGTTATTAAACACTATTTATGAACCGTA

Function

GO:

id name namespace
GO:0007179 transforming growth factor beta receptor signaling pathway biological_process
GO:0042127 regulation of cell population proliferation biological_process
GO:0046330 positive regulation of JNK cascade biological_process
GO:0035335 peptidyl-tyrosine dephosphorylation biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008138 protein tyrosine/serine/threonine phosphatase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU211916 lncRNA upstream 5218 6056669 ~ 6061997 (+) True G156326
TU211922 lncRNA upstream 14833 6050480 ~ 6052382 (+) True G156331
TU211812 lncRNA upstream 418641 5645881 ~ 5648574 (+) True G156233
TU211802 lncRNA upstream 455942 5602332 ~ 5611273 (+) True G156225
TU211788 lncRNA upstream 465556 5601105 ~ 5601659 (+) True G156215
TU211931 lncRNA downstream 21477 6117145 ~ 6117589 (+) True G156340
TU212013 lncRNA downstream 211057 6306725 ~ 6307420 (+) True G156395
TU212015 lncRNA downstream 212565 6308233 ~ 6308561 (+) True G156397
TU212017 lncRNA downstream 213704 6309372 ~ 6309620 (+) True G156399
TU212022 lncRNA downstream 218284 6313952 ~ 6317024 (+) True G156402
XM_007243996.3 mRNA upstream 1682 6063252 ~ 6065533 (+) True LOC103031281
XM_007244000.3 mRNA upstream 24712 5703096 ~ 6042503 (+) True gse1
XM_015604469.2 mRNA upstream 24712 5703096 ~ 6042503 (+) False gse1
XM_007244001.3 mRNA upstream 24712 5703122 ~ 6042503 (+) False gse1
XM_022679500.1 mRNA upstream 426102 5639248 ~ 5641113 (+) True LOC103034771
XM_007243994.3 mRNA downstream 5085 6100753 ~ 6111006 (+) True irf8
XM_007244016.3 mRNA downstream 206180 6301848 ~ 6305572 (+) True foxf1
XM_022679503.1 mRNA downstream 229153 6324821 ~ 6363149 (+) False dbndd1
XM_015604453.2 mRNA downstream 229156 6324824 ~ 6363149 (+) True dbndd1
XM_022679507.1 mRNA downstream 387151 6482819 ~ 6488287 (+) True gas8
TU211750 other upstream 909815 5157154 ~ 5157400 (+) True G156188
TU211262 other upstream 3312103 2738361 ~ 2755112 (+) True G155776
TU210855 other upstream 4797836 1265820 ~ 1269379 (+) False G155491
TU212485 other downstream 1276708 7372376 ~ 7431568 (+) False LOC111194759
TU212490 other downstream 1291834 7387502 ~ 7404556 (+) False LOC111194759
TU212659 other downstream 1504899 7600567 ~ 7606668 (+) True G156840
TU212948 other downstream 2474262 8569930 ~ 8570877 (+) True G157055
TU213377 other downstream 3845161 9940829 ~ 9941805 (+) True G157383

Expression Profile