RNA id: XM_007244000.3


Basic Information

Item Value
RNA id XM_007244000.3
length 8479
RNA type mRNA
GC content 0.52
exon number 17
gene id gse1
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 5703096 ~ 6042503 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTTCCCGTTCCTGCAGGGGCAGGAGCCCGCGCCCGGCGCGCGAGACGTGGGACCCGACGGGCACGCGCTGGCGTGCGCCGTATGCCACTGCTTCTTGCGCGAGCAGTGGAACGCGTTCGAGCGCACGCGCACGCCGCTGGACAAGCGCGTGTACTGGCTTAAGAGACCACACCAATGCGACTCGAGGCGGCTCTCGAGAGACTGGGGAGCCGCACGCGACCCGGACGCTGCCGGGGGGCTGGGGGGCGGTGACGGATCCGAGTCTTCGTCGCTGTCCGAAAGCGAGAATGAGCAGGACCTGGAGGACGGCGTGTGTAGCGTAAGTGCCAGAGCGCACGCGAGCATGGACGGCGTTGGAAAGTTCGGCCCGAGAAACCGTTCCGGGACCGTTTTGATGAACCACGACGGGCACGCCTCGCACAGCaccggcaccagcagcagtgTCAACAGCATCAGCAAGCAGCTCCTCTTTGACGCGGACGTCGATGACGCAACCGTGGCATCTTCTGGCAGGGTGGTGGCAGCTGACATCATCAGCACGGAGGTCAGCATGGCAAGCGAAGAGGAGGAACACAGGGGAGGGCGGGGCCACAGGTGCTCCTGCTATGTGTGTGGCAGGAGGCTTCCCCCAGGTGCCCGCTTTGAGGTGAGCGTGCAGAAGCAGGAGCGCGCCACAGGTGAGCCGTTCTTTCCCTTCCTGTGGCTTCACACCCCTCCGCCTGGTGCGATGCCCCTCAGCCCCCGGGGGCGTACCTTAGTCTGTGCCAGCTGCCACTCCTCACTCTTGCAACAGTGGCAGGCCTTTGAGTTGGCAGATGTACCTGTTTTGCAGCGGCTTTACGTGGTGCCATTGGATACAGGCAATGCCGACCCCCTCTCGCCCACGTTGGGCACTGTGGATGGAGCCGGGTCGGAAAGAAACATATCTAAGATCCGTCCTGTTGCTCACCCTATTGTACCTATGACCCCTCCACGCCCCACGAGAGAGGCCTGCTACCTGTGTGGGCGGGACTGTGGACGGGACATCCGAGTGGCCTATGCCCGTGCTGGAGTGGGCAAGGCTCGTGGTGCCATGTACTTCCCCTTCATCAACATGCTTCCATGCCCGCCGGATGCACAGGGCATTCGTGACGGCCAGGTGCACTGTTGCACCACCTGTCACTCAATCCTGGAGGACATCTGGGCGGCATACCGTCTGTGCCTCAGCGAGGAGCTTATCACGTCAGTCAGCACCTTTCTTGGGAGATACCACCAGGCCACTGGTGGAGGAGGTGTTCAGGCCAGTCCTGGAGGTTCTGTTCGAATTACTGCAGCGACGACAGCAGGACATACCTCTATCTGCTACCTGTGTGGAGCAGAGCTTTCACCACATACGGAGTACCAGCTTCGGGTCAACCCTCCAGGTCGATGTGCAGATAGGGAGCCTTTCTTTCCCTTCTTAACAGTGCATCCACCAGCCCCTCGTGCCCGCCCCGCCGATGCCACAGGCCTGGTGTCAGCCTGCGCCCTCTGCTACCATGACTTGCTGGGGCAATGGGCCCAGCATGAGGGCTCAGGACCAGGGCAGGGTCCATCCAGCAGCCCCTGGTCACGTCAGTACAGCTGCGACTCCTTCGTCTGCTTCTTCTGTCGGCGGGAGAAGAGGAGGCCGCTGGGCCTAAGGGCAGTCACTGTGGCCCGGCTGCCCGTCTTCCTGTACGCCCCAAGAGTCGGTCGCACACTTGTGGTGGATGATGGCAAGCAGCTGACTATCGGCTCCTGTGGGGAATGTAAGGCTATGGTGTTGGCTGGCCAAAACTTGAAGCAGGATGGTGGGGTGGACCGAGGAGTGGCAGCAGGCAAACAGAAGAGTTCCACCGTGGAGGTATTTGCTGGGAGCAAAAAGGAGGAGGATGTTGGACAACGGACTGGAGCGTTAAAGGAGGTTTCCAGGCACGACCACGGCCAGTCTGCAAAAGTGGCGGTCATCTCCACCTCGTCTCAGTCCTGCACTGAGCAAGAAGATCAGTCACCAAGCAGCATGAGCCATGAGCCAAAGTCACCATCGCTAGGCATGATCTCGACGGCGACTCGCAACACGGCGACGGTCAGTCCCCTCACCCCGTCGCCCCTTAACGGCTCAATCGTGCCCAATGGCAGCCCGGCAGCACAGTCTACGCACTCTGGATTCGCTGCTGCCCTCCGCAAGCTGGCCAAACAGGCTGAGGAGCCCAGAGCAGGTTCCTCAATCAGCAGTGAATCATCCCCAGTCTCCTCTCCAGCCACTAACCACAGTTCTCCAGTAAGCACGCCCAAGCGGGGCCCTCTGGGTCCAGTGATAGTGCCACCTGGAGGCCACAGTGTGCCAAGCACCCCACCTGTGGTCACCATCGCCCCCACCAAAACAGTCAACGGGCTGTGGAggagcgagagccgacctgttcGAGAGTCAGATTCAGGCTCTCGTGGGGTCAGCAGGGACCGGTTAGGGCCTGAGCCAGTTCCGGCTCAGGAGAAAGGAGGTCCCTCAGTTCCAGCCCACCTGATAGGAAACCCGTACGCATTTGGACTGCCCCCAGGATCCGTGATGCAGGACTCACGTTTTCAGCCACTGAATCTTCCCAGGCAGATGCCTCATGCAGTGCCCCCTGCTGGTGTGCCTGAGGAATACCTACGGGGATTCCGGCCCTATGCCACAGCAGATGAGCTGCGAATGCCCTCCCTTCCACTGGGCCTGGACCCCGcaactgctgcagctgctgctgcgtACTACCACCCTGGATACCTGCCACACCCTTCCTTCTCCCCCTACAGGATGGATGACCCCTTCTGTCTATCGGCTCTGAGGTCTCCGTTTTACCCCTTGCCTGCAGGAGGCGGTCTGCCTCCACTTCATCCTTCTGCTGTGCATATGCACATCCCAGGAGTCCGTTACCCCGGCGACCTTAGCCATGCCTCGCTGTCCAGTCTGCAGTCTGAAagGCTCCAGATGGAGGACGAGCTCCGCCAAAGGGAACGGGAGCGAGAAAAGGAACGGGAGCGGGAGGCTGAGCGAGAGAAGGAGCGcgagagggagagggagcgagaaagagagagggagaaagagcttgagcgagagagggagagagagagggaacgggagagggagagagagagagagcgggagagagagagggagctggAGAGACAGAAGGAGCGAGCAGCTCGTGAGAAGGAACTCCAAGTGTCCAAGGCCATGGAGGGTCACTACCTGGCTGAGCTGCATGCACTGAGGAGCCAGGCTGAGGAGAGAGTTAAGCCTGGAGAGAGACTGACCCCCAACAGAGCTGATAAAACCAAAGAGCCCACCCTTGCTGCTCCAAAACCAATCCAGCCTAACCTCCACCCTTCGCTAAGCTCCGCCCACCATCCAGTGCCCACTCACGGCATGTACCTCGTTCCTGGAGGCACTGGCCCTGGTCCTCTGACACCCGCCATGGCACTTCAGCGCGCCAATGAGGAGGAACGGTGGCAGGCACGGCAGAGGAAGCTACGGCAAGAGAAAGAAGACAGACAGTACCAGGTGTCAGAGTTCCGGCAGCAGGTACTAGAGAAGCATCTAGACATCGGAAGACCAGGCGAGGCAAACGAGTTACGGACAGAGGGACACAGGCCTCTGTCACACCATCTTGAACCCAGCAGCAGAGACCGAGAGCGAGACATCCACCCACATCTTGGAGCCCCACCCCCTCTCATCTCCCCCAAACCCCAGCACAGAGACCATGTCCCTCCCCCACCCACCACCCTCTGGAATCCCGCGTCACTCATCGAAACCTCCTCTGACTCGCGGCGCTCTCTCCACGACCCTCCAGGCCTTGGCCACTATGACCTCAGCCGACTCCATCCACCTCCAACCAAACCTGAGAGGCACTATATCTCTGATAAGCCCGACGATGGGTCTCGTAGAAAGGACGTGCTGGATAAGTACCCACCCATCCGTCCCACAGGCTTTTCTGAACCCAGCACCTTCCTAGCCGAGCTGGAGAAGTCCACTCAGACCTTCCTGAACCAGCAAAGGGCAACCCTGAGCCTCAGCAGCCAGTATGGAGACCTCAACAGCAGCTTGAAAAGCAGTGGGGCTCATAAGGGCCTCCAGATGCCACCACGGCCGAGCCCAGAGTCCGTGCTGGTGTATGATGAGTTCCTTCAGCAGCATCGGCGGCCCGTCAGCAAACTGGAcctggaggagaagaggaggagagaggccAGAGAGAAAGGTTATTACTATGAGCTGGACGAGTCCTATGATGAGAGTGATGAAGAGGAGGTGAGAGCTCATCTGAGGAGAGTAGCCGAGCAGCCTCCACTCAAACTGGACGACTCCACAGAGAAGGTGGAGTTTTTGAGGATGTTTGGTCTGACCACTGTGTCACGGCGAGATGACCTGTTGGAGCAGAAGAGGAGAAAAAGGAGGAGGATGCTGAGGGAACGAAGCCCCACTCCTCCAGCCATAGCAAACAAGCGGCCAACTCCGCCAGCTGCCCTCAGCACCCGCTTCACACCCGAGGAGATGGACAACAGCCCAGAGCTGGAGGACAAAAAACGGTTCCTCACCATGTTCAGCCTCAATCATCTCACCATGCAGCAGAGGAAAGaaaatgaaagaatggTGGAGTTACTGCAAGCCATTAAACTGAAGAGTGTGACTTTAGACAATATCAGGCATAACCCCAACCCACTGTGCAAGAGCCCCTCAGCCCATCACTCTGATTCATCTTCGTCGCCATCTCCTGGCCGAACCAGCGATCCAGTCAGTGCCAGGCCCCCCAGTCCCCCAGCCATTGGGCATTCGCTTCCAGCTGACCCCTCTACAACTCCAGACCATCTCAGGCCTCTCCCTGATCCACTCAGAGCCAAGGAGCCTCCCCTGCCTCTTTCTTACCCAGACAAAGGCAGAGGTAACGAAACAGCCCCTGGCAAGAAGCCCTCGAGCCTGCTGAACAGCATGCGGCCGCCTCTGCACCCCAAAGACGGCTCGGGCAGTCTGAACGGCAGGACTAAGCCATGGGAGAGCTTCACTGCGGAGGAGTTCGCTCAGCAGTTCCACGAGTCAGTGCTGCAGTCTACTCAAAAAGCCCTGCAGAAGCACAAAGGTGGCTCCTCAGCCATCTCTGAGCCAAACCACACAGTGGACTCCTTAGTGCACTACAACATTCCGGAGCTCCAGAGCGGTCCAGGTCGTACCACACATCCTCACATACACTCTGCACAACAGCCCAATGGCCAGCACTGCCCACCCGGACCCCGCCGTGACGGGACAACGCTGACCACAAGGCCCGAGCTATCTGCTGAGGAGGACTCGGAAGAAGGagaagatgaggaagaggaggaggaagaagaggctCCAGGGTCAAGGTGGCATGGGATTGAGGCTATCTTTGAAGCTTATCAGGAATATGCTGAGGAGCAAAGTATTGAGCGTGAGGTGTTGCACACTCAGTGCAGGAGGCTTGAGGCCCAACACTTCAACCTCAGCCTGACTGCtgaacagctctctctctctatggggGAGCTGATGGCTCAGAAGCAGAAGCTAGCAACCGAAAGGGAGAAGCTACAGGCCGAACTGGAGCACTTCAAGAAGTGCCTGACCCTACCACAATCTCCCTGGTCCAGGGCTCACTTCAAGGGCTATCCTCCCAGGTGACATCTCCACTGCGCCAGCCAACCCTTCCCGAACCCCCCATTCCCCTAGAAAGCCCGGACTCCATCCCCTTTGGGTCCTCCATCGTGAGAGCAGAACCTGCTGCCCACTGTCCTTGGAGACAGGTGAAGAGATGGTGCACTGTGGTCACACTGAGAAGGATAAATGCtgattgatatatatattttttttttataaaaaaggcCAAGCTCCAAATTGTGCCATGAGCAAAAGACTGATGCCACCCACCAACATCCATCCCCTCCAGGTTGGATTGTCTTTCAGCACCATCAGtaaacaactacacacacagactacaaGGTACATAGCAGTAGGCAAAGCCCACCTGTCACAAAGTCAAAGCAGAGTTAAAGCTTTAGACACAGCCCAGACGCTATGAGCAAACTGAATGGTCCTAATGAAGGGGACCTAAATATACAATATCAACTCCCAAACCGTTTCTATCAGCATATGGCAGCCACCAAATCCTTCACCATCTCACCTGGAGGTCCAAGGAGCTTTCAACTGGAAATGCActtaaaaagacaaagaaaaagcagaagaaCTACCTGGAGGTACTGTGTTCTAACAAGGAACTCCTTTCAAACTAGGGAagaacttaataataataaaaaaaaaaatgcacattttgtgaaaaaaaaatggaaaaatgttttattcaagATAGATGATTgagaataaagtttttaaagagGTGCTTCAGCCTTGTATTGTAAATATCCAAACAAAACGAAAAAAgaattttgtatgtttttattacttaaatacagtaattgttatttgacaaaaaaaagcctgccattttttttatatgcttgTGCTTTTAAAATAGGGCGTAAAGCTGAAGCCTTGCTTTTAGTGTTTGTATTGCTGCTGGTCAGGATAAAGAAGGAAGTACAGGCCCTATGCCCTcctcctgtgtgaatgtgtgtgtgtatggatgtatgtatgtacgttCATTATGTCACAGTAGCATCAATGAAAAAGCTAGATCCACCCTACTCCAACACCACCACTCACAGACTCTTAGAACCATGTCTGACCTTCTGAACTGAgcttttctcttattttaagCCAACAAACATGAACATCTCTGGCAGATTACCATTATTTTCCCCCAACAGTTACATGTATTATATTCGATTCAAGCAAATTATAAGCTACTGAAGCACATATGCTACCATTCAAAtgtctggaaaaacaaaagtcAATATTATTGCCATTTTTTTGTACCAACTATACAGATACATGGTTCTGTTATAATGCTACCACCCTACAATTTAGATATGGCAGTTTCCACttgttatatattgtatttaaatgcAGAGAGTTTACTTTAAATGCATACaggaaatgaataaaaaacagtaacCTACGCAGTCTTCCTAGCTATACGCAACTAGAATTAAATCACATAATTTGAAGTTCACACAGATAAAGTTTGCTGCAGATCATTTCAATATAACTGAAACACGAGTAGACATTGAGAAGTAATAAACATCACAAAAATgtagaatttaaaataattaactgaGTGTAACAAAacaacattgtttaaaaatgtattattttgaattattgtCTTTTCATATCTGAAATTATGATAAACAACTGCTGGATTCACAATTTGTcagtctttccttttttttggcaaattatATCTTGACAGTAAGTGTGTATAGTGGGTAGCACTGTGCCATGGACAAGAAATGCATAACATGATTTAAATGTCACTCTAATGTAATAGTTACTGAGGAAAatttaaacactgaataaaaacactTGGTgacttgtttatatttatactgtctCTGCACCATGATTAGTGGCTCTAAACTTTTGAATGCAGAGAAACACATCTGATGAGATCTCAGTGAGTGCCAAAGGTACCCACCCAACCACAGATACAAGAAAATGTTATGCCAAATGTTTAATAGTGCTTAtctaaaaattaaactaaagtgtcaaatattaaataaataaataaaactttaaaaatataattttgccAACATTTCTCTCCTTTCCAATACTGGTAATCTAGAGTCAGCAATCACCTTGACTCTTTTAAATCCAGTCCACTCAATAGTTATGCCTCCCCCTTCAGTTTCAGGTGTTTGAATGCTTCCTGAACTAGTGTGTCTATCATCTCCTCTCAGAAggtctatatatacacacacgtcTGTTTCGCCTTGCCCAGTGAATGCCATCTGAAGCATTTGTCCCGTCAGCATTAGGCCAAAAATGTCAGCAGCGTCTTTAATATATCCACAGACTGGCAGTTTACAGTTAAAGCATTACTCAAATTCAGCCCAGGCCTGCATGATATTCTACTTGATTATAAAGGCTGTGCTTTATAACTGGACCCCTCAACCCATCCCTGGGTTTGTGTCACTCGCGTGCTCAGAGGCCCGCAGGATGGGCAGGTTTCAAAGGTGGTTCCATGTTTACAAACCCAAGGCTGGCCCTAAAGaacgtgtgtatgtgtatgtgtatgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgcttcaGCGAGCACTACCACTGCCTGTCCAAGAGCAGGGAACCGCCCTCTCTCCCTCGCCCAACTCTCACGCACGCACACGCAATAGCCCCCGAATTCAATGGAGGATGTCTAGATGCTGTGAAATCATGTTTTTAAGAAAAACGTACTTGTTTGAattcaatgtaatgtaatatattcttTGTTGAATGTAGTAATTAGGTATTTATGAATATATTGCTGTaatttcagacaaaaaaaataaaatatttcaaaaatgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU211812 lncRNA upstream 54522 5645881 ~ 5648574 (+) True G156233
TU211802 lncRNA upstream 91823 5602332 ~ 5611273 (+) True G156225
TU211788 lncRNA upstream 101437 5601105 ~ 5601659 (+) True G156215
TU211781 lncRNA upstream 218051 5484764 ~ 5485045 (+) True G156209
TU211776 lncRNA upstream 261097 5441738 ~ 5441999 (+) True G156204
TU211922 lncRNA downstream 7977 6050480 ~ 6052382 (+) True G156331
TU211916 lncRNA downstream 14166 6056669 ~ 6061997 (+) True G156326
TU211931 lncRNA downstream 74642 6117145 ~ 6117589 (+) True G156340
TU212013 lncRNA downstream 264222 6306725 ~ 6307420 (+) True G156395
TU212015 lncRNA downstream 265730 6308233 ~ 6308561 (+) True G156397
XM_022679500.1 mRNA upstream 61983 5639248 ~ 5641113 (+) True LOC103034771
XM_007244010.3 mRNA upstream 72906 5621220 ~ 5630190 (+) True atmin
XM_007244011.2 mRNA upstream 83805 5612961 ~ 5619291 (+) True cenpn
XM_007244014.3 mRNA upstream 105308 5536734 ~ 5597788 (+) True cdyl2
XM_007244015.3 mRNA upstream 179053 5521686 ~ 5524043 (+) True LOC103036856
XM_007243996.3 mRNA downstream 20749 6063252 ~ 6065533 (+) True LOC103031281
XM_007243995.3 mRNA downstream 24712 6067215 ~ 6095668 (+) True LOC103030962
XM_007243994.3 mRNA downstream 58250 6100753 ~ 6111006 (+) True irf8
XM_007244016.3 mRNA downstream 259345 6301848 ~ 6305572 (+) True foxf1
XM_022679503.1 mRNA downstream 282318 6324821 ~ 6363149 (+) False dbndd1
TU211750 other upstream 545696 5157154 ~ 5157400 (+) True G156188
TU211262 other upstream 2947984 2738361 ~ 2755112 (+) True G155776
TU210855 other upstream 4433717 1265820 ~ 1269379 (+) False G155491
TU212485 other downstream 1329873 7372376 ~ 7431568 (+) False LOC111194759
TU212490 other downstream 1344999 7387502 ~ 7404556 (+) False LOC111194759
TU212659 other downstream 1558064 7600567 ~ 7606668 (+) True G156840
TU212948 other downstream 2527427 8569930 ~ 8570877 (+) True G157055
TU213377 other downstream 3898326 9940829 ~ 9941805 (+) True G157383

Expression Profile