RNA id: XM_007244016.3


Basic Information

Item Value
RNA id XM_007244016.3
length 1960
RNA type mRNA
GC content 0.56
exon number 2
gene id foxf1
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 6301848 ~ 6305572 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

agaagagaggagaagataGACGAGAGGAGAAGAGTAGGAGCTCTTAGCAGCCTCCCCCaacgtgttttttttctacttccAACCCCCACCTCTACTACTTGCACCACCACCTtcaaattttcatttcattgtGGACTGTGCTATCTGAGGAACAACCCAGAGGAGAaataagaagtttttttttccaactttgaCGTTTCTTTCCATACTTTTGGTTGCGCATCTGAAGCAAAGAAGTCATGGTCCAGAGTTGGTTGTGAGGGAGTTAACTGTGTTCGTGTTGTTTTTTGTACGCTACCCGAGAAGCAGATCCACCGCGGGGGAGTTCCCTTCCTGGCAAGCTCCTAAATGACGGCCGAGATCCAGCAGCCATCCGTGCAGACTCCTGCCCAGAGCAGCCCAATGTCTGCGCCAGAGAAGCCGGCAGCGATGGACGCGGCCTCCTCTGCCACCAAGACCAAGAAAACTAACGCCGGCATCAGGCGTCCCGAAAAACCGCCGTACTCCTATATCGCTCTCATCGTCATGGCCATTCAAAGTTCTCCCACCAAGCGCCTCACCCTCAGTGAGATCTACCAGTTCCTCCAGAGCCGCTTCCCCTTCTTCCGCGGCTCCTACCAAGGTTGGAAGAACTCTGTGCGCCACAACCTGTCCCTCAACGAGTGCTTCATCAAGCTCCCCAAAGGCTTGGGTCGCCCAGGCAAGGGTCACTACTGGACCATTGACCCGGCCAGCGAGTTCATGTTCGAGGAGGGTTCGTTCCGGCGCAGGCCGCGCGGATTCAGGCGCAAGTGCCAGGCGCTCAAGCCTTCCATGTACAGCATGATGAACGGCCTGGGATTCAACCACCTCCCCGACTCCTACAACTTCCAAGGCGGCGGAGGGGCGCTGTCGTGCCCTCCCAACAGCTTGTCTTTGGAAAGTGGGATTGGGATGATGAACGGACACTTGACCGGCAACATGGACGGTATGGGCCTGGCTGGACACTCCATGTCCCATCTGTCAGCCAATGGAGGACACTCGTACATGGGCAGCTGCACGGGACCGTCCGCCGGTGACTACCCACACCACGACAATGCCGCATCTCCGCTGCTGCCCAGCGGACCAGGGGTCATGGAACCCCATCCCGTTTACTCGAGCCCCACGTCGGCGTGGGCGCCCACCCCGTCCGCCTCTCTCAACAATGGAGCGTCCTATATCAAGCAGCAGCCGCTCTCGCCCTGCAACCCTGGGACGAACCCCCTGCAGCCCAGTTTACCCACGCACTCCCTGGACCAGTCATATCTGCACCAGAACGGACACAGCACGAGTGATCTTCAAGGTATCCCCAGGTACCACTCGCAGTCTCCAAGCATGTGTGACAGGAAGGAGTTCGTCTTCTCCTTCAACGCCATGACTTCATCCAGCATGCACTCACCCGGCAGCGGTTCCTATTACCACCATCAGCAGGTCGCCTACCAGGACATCAAGCCTTGCGTGATGTGACAGGAGCACCAACAACAGCAGCGGTGGTAAGGGTCAGCGCCAGCCGGGGCACTGCTGCGGGAGAGCGGCTGCGGGAGTGGGGGGACTCGCTCGGTCGGGCCCTGCTGGAGCGCAAAGAGGCGAAGGACACAAAAAAGACCACGAGACACTCGGTACAAGAAGAACTCTATCAGGGACGGAGAAAGGGCGTGCGCAATGTGCCATGCGACCTGCACCATGCGTAATGCGCTCTGCATTATGTGCCGTGCATTATGCGCCCTAAAGCGCACAGGCCACACTATAGGCTACCGGACAGAACTCTCGCCCCGCTCGGTACTCGCTCTGCTGGCGGATCATTAACACATCACAGAgcgtatgtgagtgtgtgtgtgagtgtttgtgtgtgtgtgagactggctgcaaaaaacacacatttgcaGTGAAATTCAGGATGAGTTGTTCTTATCGGATCataagtcattattattattatatt

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09399 FOXF; forkhead box protein F

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU211931 lncRNA upstream 184259 6117145 ~ 6117589 (+) True G156340
TU211916 lncRNA upstream 239851 6056669 ~ 6061997 (+) True G156326
TU211922 lncRNA upstream 249466 6050480 ~ 6052382 (+) True G156331
TU211812 lncRNA upstream 653274 5645881 ~ 5648574 (+) True G156233
TU211802 lncRNA upstream 690575 5602332 ~ 5611273 (+) True G156225
TU212013 lncRNA downstream 1153 6306725 ~ 6307420 (+) True G156395
TU212015 lncRNA downstream 2661 6308233 ~ 6308561 (+) True G156397
TU212017 lncRNA downstream 3800 6309372 ~ 6309620 (+) True G156399
TU212022 lncRNA downstream 8380 6313952 ~ 6317024 (+) True G156402
TU212040 lncRNA downstream 77695 6383267 ~ 6384043 (+) True G156419
XM_007243994.3 mRNA upstream 190842 6100753 ~ 6111006 (+) True irf8
XM_007243995.3 mRNA upstream 206180 6067215 ~ 6095668 (+) True LOC103030962
XM_007243996.3 mRNA upstream 236315 6063252 ~ 6065533 (+) True LOC103031281
XM_007244000.3 mRNA upstream 259345 5703096 ~ 6042503 (+) True gse1
XM_022679503.1 mRNA downstream 19249 6324821 ~ 6363149 (+) False dbndd1
XM_015604453.2 mRNA downstream 19252 6324824 ~ 6363149 (+) True dbndd1
XM_022679507.1 mRNA downstream 177247 6482819 ~ 6488287 (+) True gas8
XM_007244032.3 mRNA downstream 425598 6731170 ~ 6759468 (+) True LOC103042367
XM_007244034.3 mRNA downstream 503363 6808935 ~ 6817496 (+) True zdhhc7
TU211750 other upstream 1144448 5157154 ~ 5157400 (+) True G156188
TU211262 other upstream 3546736 2738361 ~ 2755112 (+) True G155776
TU210855 other upstream 5032469 1265820 ~ 1269379 (+) False G155491
TU212485 other downstream 1066804 7372376 ~ 7431568 (+) False LOC111194759
TU212490 other downstream 1081930 7387502 ~ 7404556 (+) False LOC111194759
TU212659 other downstream 1294995 7600567 ~ 7606668 (+) True G156840
TU212948 other downstream 2264358 8569930 ~ 8570877 (+) True G157055
TU213377 other downstream 3635257 9940829 ~ 9941805 (+) True G157383

Expression Profile