RNA id: XM_015604486.2


Basic Information

Item Value
RNA id XM_015604486.2
length 2233
RNA type mRNA
GC content 0.45
exon number 8
gene id zdhhc7
representative False

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 6808935 ~ 6817496 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cagtGTTATTACTGAACTGGAACTGGGCTATAATGAAacagaaatattaaaattatggaTTAAATGTGTTAACTATATTAAATTCGTGGCAGAATATTGGCTGAAGGACGATGTTGAACGCTGTGGATGTAGTGACAGTGCTGCCCAGGTCATTGGGGTGGACGGCATGTCTGTGTGAGGGCCAGTCAGAAAAGTAGACAAGTATGCAGTCTTCTGGACACCGGTTACGGGATGTGGAGCAGCACCATCCCTTACTGGGCAGTGGGGAGGAGGAGGTGGCAGTGGGCCGTGTCTGGTTTATCCAGGATGGCTGTGGCATGGTGTGCGCCTTCATGACCTGGTTTCTGGTGTTGTATGCACAGTTCGTGGTGAATTTTGTCATGTTGCTTCCCTCCAAAAGCTTCTGGTACACTTTAATCAATGGAGTGGCGTTTAACTTCTTGGCTGTGCTGGCGCTGGCATCGCACCTACGCACCATGCTGACAGATCCGGGAGCGGTCCCTAAAGGTAATGCCACTAAAGAGTACATGGAAAGTCTACAATTGAAACCTGGGGAGGTCATCTATAAGTGCCCTAAATGTTGTAGCATCAAGCCAGAGAGAGCCCATCACTGCAGTATCTGCAAGAGATGTATCAGGAAAATGGATCATCATTGTCCCTGGGTGAACAACTGTGTGGGAGAAAACAATCAGCGGTTCTTTGTCCTGTTCACTATGTATATAGCTTCAATTTCCCTGCATGCCCTCTGCCTCAGCTTTTTCCATTTCTTCACCTGTGTCAAAGTCCAGTGGAGCGAGTGCAGTGATTTCTCCCCTCCTGTGGCCGTCATGCTCCTCATTTTCCTCTGCTTGGAGGCTATCCTCTTCCTCACCTTCACCGCCGTCATGTTCGGCACACAAATTCACTCCATTTGCAATGATGAGACGGAAATCGAGAGGCTGAAGAATGAGAAGCCGACGTGGGAGCGGCGGGTGCGCTGGGAGGGGATGAAGGCAGTGTTTGGGGGTCCTCCCTCTCTTCTGTGGTTCAATCCTTTTGCTGGACTGCGCCTCAGGCGCCTGCGGATGGTCCACAGTCGCAAAGGAGGCTCAGAGTTCTCAGTCTGAGGCATCCCAGcatcctggtgtgtgtgctaacaTGCCAGTAAACCCCACACATTGAGAACATGGCACATCTCTCCTAGCTGGTGGTGCAGGTAGGAGAACACAGTGAAGAGAATGCAATAGACTTAAAGCTGCTGgcccggaggaggaggagaggggcTGGGCCAGGACCGTATAGACTCTCTATTAAACCACTGGACCTCAACAGAAGGATCATAATTTTTACTTTTGCTTACGTTGGCTGTGCCTGACCTGTCTTCATGAACATCCGAACAGATTTTccgtttgtttgtgtttttaagggactatttttttgtgtagatATAATACAAGATATTGACTCAATGCTTTAAAAAGGTACCAAGAACATCAGCATTTATAAGGGTATTGCTTCAGAGCATTAGTGTCAAAGTAGTCAAGTTCTTTACAGTCAGTGAATCttggtccaaaaaaaaaaatcctacggACCAAATTGAAATTTGGAGAAGAATGTCTTATTTGCCAAGAAAGTTCTAAACCATATTCTGCATTAAGTGCTTGCTATGAAGCTGTAATAAAACGCTCCCCTGTCTTAGGTATAGATTATACATAAAATCATGAGATAAACATTAAATCAGAAATTATGACAGATGACAGATTATTTTAGCTTATTATGTTGTAGAGACAATAATACATCTAAAGCCTTATTTACACAATCTTGAAGATTATAGAAATGGCAGTAAATGCTGTAGAGAGTATTTAGATCACTGCACTGTTTCAGTGCTGCAGTCATGATCAGTTTTTAAGCTGTTTGAATGGCAAGAATCAAGACAAATCACTTTAGGGTGTGCAGAATGAAAGCATGACCTGCACCCTTTTGCACATTTGAGTTCAGCCATTACATCTGAGGGCTCAGTCAGACCCAGCTGTTGTTTCATATTTCCAGATGTTTGGTTCAAGCTCCTTGTCCTTTTTTGATGCAGAGGCAGCACTGTGTGGTACGGTGCTGCGGCTGCACCTCACTCTCTAATCTTCACTGTATTTCTCACTTCTCTGTAAGACGGGAGCTTTTACCTCAGCGGTTAATAGTGATTTTTATGACGATATATGTATAATTATTGCagatgaaaacatgttttacgAACTAAATA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component
GO:0016746 transferase activity, transferring acyl groups molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212190 lncRNA upstream 34435 6768942 ~ 6774732 (+) True G156523
TU212165 lncRNA upstream 137973 6670921 ~ 6671194 (+) True G156499
TU212086 lncRNA upstream 307993 6499851 ~ 6501174 (+) True G156451
TU212071 lncRNA upstream 367890 6441051 ~ 6441277 (+) True G156438
TU212069 lncRNA upstream 376341 6432397 ~ 6432826 (+) False G156436
TU212237 lncRNA downstream 50764 6868260 ~ 6869564 (+) True G156562
TU212321 lncRNA downstream 209102 7026598 ~ 7030708 (+) True G156623
TU212379 lncRNA downstream 350712 7168208 ~ 7171625 (+) False ptprq
TU212428 lncRNA downstream 428268 7245764 ~ 7248460 (+) True G156697
TU212484 lncRNA downstream 534501 7351997 ~ 7412688 (+) True G156731
XM_007244032.3 mRNA upstream 49699 6731170 ~ 6759468 (+) True LOC103042367
XM_022679507.1 mRNA upstream 320880 6482819 ~ 6488287 (+) True gas8
XM_022679503.1 mRNA upstream 446018 6324821 ~ 6363149 (+) False dbndd1
XM_015604453.2 mRNA upstream 446018 6324824 ~ 6363149 (+) True dbndd1
XM_007244016.3 mRNA upstream 503595 6301848 ~ 6305572 (+) True foxf1
XM_007244039.3 mRNA downstream 6133 6823629 ~ 6828644 (+) True cog8
XM_007244036.3 mRNA downstream 21382 6838878 ~ 6858524 (+) True wdr59
XM_007244037.3 mRNA downstream 21382 6838878 ~ 6858524 (+) False wdr59
XM_022679512.1 mRNA downstream 54365 6871861 ~ 6930402 (+) True LOC103038759
XM_022679513.1 mRNA downstream 54365 6871861 ~ 6930402 (+) False LOC103038759
TU211750 other upstream 1651767 5157154 ~ 5157400 (+) True G156188
TU211262 other upstream 4054055 2738361 ~ 2755112 (+) True G155776
TU210855 other upstream 5539788 1265820 ~ 1269379 (+) False G155491
TU212485 other downstream 554880 7372376 ~ 7431568 (+) False LOC111194759
TU212490 other downstream 570006 7387502 ~ 7404556 (+) False LOC111194759
TU212659 other downstream 783071 7600567 ~ 7606668 (+) True G156840
TU212948 other downstream 1752434 8569930 ~ 8570877 (+) True G157055
TU213377 other downstream 3123333 9940829 ~ 9941805 (+) True G157383

Expression Profile