RNA id: XM_007244039.3


Basic Information

Item Value
RNA id XM_007244039.3
length 2170
RNA type mRNA
GC content 0.51
exon number 5
gene id cog8
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 6823629 ~ 6828644 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCCCCTTCTCCTGCCGGAGAGTAAAGATGGCGGCAGTAGACGTGGAGGATGAGAGTATCCTGGTGTCCGTGTTTAAGGACAGTTTCCCGGAGAACTGGCGGGAGAACCCGGACTTCGCCGCGTACCTGGCGGAGCTGTGCTCGCTGGGGGTGGAGCGGTTGGGCCGGGAGCCGGAGCGGCTGAGTGAGGAGCGCGCGCAGATCCTACAGCAGACCCGCGAGCTCGCCTTCTCCAACTACAAGACCTTCATCCGCACCGCGCACTGCACCAAACACATCTACACAGACTTCGGCCGCGTGGAGAGCAGCCTGTCCAAACTGCTGGATAAACTGCCCAGCTTCGGAGAAAAATGCAGGGGCTTTGtaaaagaagcagaagagaTCGGCCTGAGCCGACGCATGAACAGTCTGACCCTGAATCGCCACACAGAAATCCTGGAGATTCTGGAGATCCCCCAGCTCATGGACACCTGTGTGCGTAATGGGTATTACGAGGAGGCGCTGGAGCTGGCCACCTATGTGAAGAGGCTGGAGAAGAAACACTCGTCTCTTCCTGTCATTCAGGGAATAGTACGTGAGGTTCGACAGTCAGCTCAGCTCATGCTGAACCAGCTCCTTCAACAGCTTCGCAGCAACTCCCAGCTGCCGGTTTGCCTCCGGGTGATTGGCTACCTGCGCAGAATGGACGTGTTCACGGAAGCAGAACTACGTGTGAAGTTCCTGCAAGCTCGTGGCAGCTGGCTGCGTTCTGTCTTAGCTGCCGTCCCTGACGAGGACCCTTACTTCCACATCACCAAAACCATCGAGGCCTGCAGAGTTCATCTGTTCGATATCATCACCCAGTACCGCGCCATTTTCTCAGATGAGGATCCCCTGCTGCCTCCGGGGGGACAGGTTGTCAATGAAAGTGCCATCTTTCACGGCTGGGTGGTGCAGCAGATCTCACAGTTCCTGGAAACCCTGGATAGAGATCTGAAGCGTGGAGTGGGAAGCCGCTTGGACTCCCTGCTTGGCCAGTGCATGTACTTTGGTCTGTCCTTCAGTCGTGTCGGGGCAGACTTCCGTGGGCAGCTTGCACCGATGTTTCAGCAAGTAGCCATGGACACGTTCCAGAAAGCTGTGAAAGAAGCTGTTGATAAGTTTCAAGAAGACATGAATCTGTACACTCTTATTTCTCTCCCGTCAATGCTTGGCAATACTATCCCCCCTGTGGCTCCAAGTACTCAGCCTGGCACTCTCCAGCCTCCTATGGCCTTGTTGGACTTCCCTCCGTTAGCCTGCTTTCTGAATAATGTCCTAACAGCCTTCAATGATCTGCGTCTCTGTTGCCCCATTGGTTTAGCCCAAGAAGTTACCAAATGTCTTGAGGATGCTCTTCTGAAGGTGACCAAATTAATCCTGGTGTTCCATCGAGCAGAGGAGTCGGCCTTCAGTACTCGTGAGCGGGAGTTATTCGTTCAGTTCTGCTGTGCCTTTGCTGAGGACCTGGTGCCATTCCTGAACCGATGTTTACAGGTTCTCTTCCCTCCAGCTCAGCTTGCACAGATTCTTGgTGTCCCACCAGCTCAAGTTCATAAATACGGTAATATCGGCTGTATCAGTGTGAGCGCAATACTGAAGCCTTTAGAGTTCATTCTCCCCAAGAGAGAGCCCATCTTCCCTGCCATGGATCTCTCTGTTGGCATGACTGGTTTAACCACAACAGATACTGAACCTCTACTACCAATCAAACCTTCATCATCCTTAGAGAAAGTTGAGGACGCTCAGCAGCCTTCTTCCCATGTCCAGCAGATACCGGAGACAGAACCTACTGTTGAATCGCCTTCAAATCACGCAGAACCTGCAACTGGAGATGCTGAGAAAAGCATTCCAGAAGAATTGTCCCCAGCAGTCACACAATCTGAAGATATGCTACTATCTGAGTGAAATGAAGATTTACGATTATCGCATCTGTTAAAACTTAAACCTTTAATACCTGAACACTATGTTAATATACTTGCACTTTTCTGGCTACTTCCTGTCTTTGGGAAATGCTGGATTGAGTTACTATGCTTCTCCTGggaaattaatgtatttaatatataaattgttTGAAATGACTGGCTGTACATAAAAGTTTTCCTTGGGTCTTTCGAAACTGAATGATGAGATTAAATTTGTATGGGTTTAAA

Function

GO:

id name namespace
GO:0017119 Golgi transport complex cellular_component

KEGG:

id description
K20295 COG8; conserved oligomeric Golgi complex subunit 8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212190 lncRNA upstream 48897 6768942 ~ 6774732 (+) True G156523
TU212165 lncRNA upstream 152435 6670921 ~ 6671194 (+) True G156499
TU212086 lncRNA upstream 322455 6499851 ~ 6501174 (+) True G156451
TU212071 lncRNA upstream 382352 6441051 ~ 6441277 (+) True G156438
TU212069 lncRNA upstream 390803 6432397 ~ 6432826 (+) False G156436
TU212237 lncRNA downstream 39616 6868260 ~ 6869564 (+) True G156562
TU212321 lncRNA downstream 197954 7026598 ~ 7030708 (+) True G156623
TU212379 lncRNA downstream 339564 7168208 ~ 7171625 (+) False ptprq
TU212428 lncRNA downstream 417120 7245764 ~ 7248460 (+) True G156697
TU212484 lncRNA downstream 523353 7351997 ~ 7412688 (+) True G156731
XM_007244034.3 mRNA upstream 6133 6808935 ~ 6817496 (+) True zdhhc7
XM_015604486.2 mRNA upstream 6133 6809167 ~ 6817496 (+) False zdhhc7
XM_007244032.3 mRNA upstream 64161 6731170 ~ 6759468 (+) True LOC103042367
XM_022679507.1 mRNA upstream 335342 6482819 ~ 6488287 (+) True gas8
XM_022679503.1 mRNA upstream 460480 6324821 ~ 6363149 (+) False dbndd1
XM_007244036.3 mRNA downstream 10234 6838878 ~ 6858524 (+) True wdr59
XM_007244037.3 mRNA downstream 10234 6838878 ~ 6858524 (+) False wdr59
XM_022679512.1 mRNA downstream 43217 6871861 ~ 6930402 (+) True LOC103038759
XM_022679513.1 mRNA downstream 43217 6871861 ~ 6930402 (+) False LOC103038759
XM_022679514.1 mRNA downstream 43217 6871861 ~ 6930402 (+) False LOC103038759
TU211750 other upstream 1666229 5157154 ~ 5157400 (+) True G156188
TU211262 other upstream 4068517 2738361 ~ 2755112 (+) True G155776
TU210855 other upstream 5554250 1265820 ~ 1269379 (+) False G155491
TU212485 other downstream 543732 7372376 ~ 7431568 (+) False LOC111194759
TU212490 other downstream 558858 7387502 ~ 7404556 (+) False LOC111194759
TU212659 other downstream 771923 7600567 ~ 7606668 (+) True G156840
TU212948 other downstream 1741286 8569930 ~ 8570877 (+) True G157055
TU213377 other downstream 3112185 9940829 ~ 9941805 (+) True G157383

Expression Profile