RNA id: XM_007244043.3


Basic Information

Item Value
RNA id XM_007244043.3
length 2766
RNA type mRNA
GC content 0.45
exon number 10
gene id fkbp4
representative False

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 7263863 ~ 7271911 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCTGCCCTTCCTTCTCCAGAATGTGCTGGTGGTAATCGCTGCTTTATAGCCGCAGCCTGGTGCTAAAGGTCTGCAGAGCTACGAGGCGGCTGCACGCTGCAGATATCTCCAAAATAACAGCATCTATCCAGCTAACGTTACACTTTAGCTAGATTCACAAAGACACGGCATAGCTTTACTGAAGCTAACTAATAACGTTATTAACTAAAGAACCAGCAGCACAGGGACACgactataataataacacaacagCGACCACCTGACTgactctgcagcagcagcagcagcccggGATTGTGGTAGATTAACTCGGGTTTGAGGATTTACTTTCACCCAGAAACCAGAAGAGCTGTGGAAGACCCTGAGAGGAGACAAACATGACTGCAGAAGAAGTTGCCAATGATGGAAACAGCATCCCTATGGAGGGAGAGGACATAACTCCTAAAAAAGATGGAGGAGTTCTGAAGTTGGTGAAAAAGGAAGGCACGGGTACAGAGCTGCCGATGACGGGAGATAAGGTGTTTGTGCACTATGTTGGTACACTGTTGGATGGCACACAGTTTGATTCCAGCCGTGATCGTGGAGAGAAGTTCTCATTTGAGTTGGGGAAAGGTCAGGTGATTAAAGCTTGGGATATTGGTGTTGCCACAATGCGCATCGGTGAGATCTGTCAATTGTTCTGCAAACCTGAGTATGCCTATGGAGCTGCTGGCAGCCCACCCAAAATCCCACCCAATTCTACCCTCATATTCCAGGTTGAATTGTTTGAGTTTCATGGTGAGGACATCACTGATGAGGAAGATGGCGGAATTGTCCGTAGAATCATAACCAAAGGAGAGGGTTACACTAAACCCAATGAGGGAGCTTCTGTGGATGTGCATCTGGAGGGCCAGTATGAGGGTCGTGTGTTCGATGATCGAGACCTGAAGTTTGAGGTGGGAGATGGAGAGAATCTTGACCTGCCGCCAGGTGTGGAGAAAGCCCTGCAGGCTATGGAGCAGGGAGAGGAGTCTTTATTCACCATCAAGCCAAAatatggATTTGGAAATACTGGATATGCCAAATTCAATATTCCTCCTGGTGCAACCCTGCAGTACAAAATCAAACTGACAGCTTTTGAAAAGGCAAAAGAATCTTGGGAGATGAACACTTGTGAGAAACTGGAGCAGAGCACAATCGTAAAAGAGAAAGGAACACAGTACTTCAAAGATGGCAAGTATAAGCAGGCAGCAGTGCAGTATAAGCGTATTGTGTCCTGGCTGGAGCATGAGTCCAGTCTGCAGGGGGAGGACGAAGAGAAGGCCAAAGCTCTGCGGTTGGCAGCTCACCTCAACCTGTCCATGTGCTACCTAAAACTACACGATCCCAACCCTGCTCTCGAAAACTGTGACAAGGCACTGGAATTGAGTGCGAATAACGAGAAGGCTCTGTTCAGGAGAGGAGAGGCGCTTTTTGTGATGAAGGAATTTGAAAGAGCAAAAGATGACTTTCAGCGTGTCATACAGCTCTACCCATCCAACAAGGCTGCAAAGAGCCAAGTGGTGCTGTGCCAGAAACACATCAAGGAGCAACACGAGAAGGACAAGCGTCTGTACGCGAACATGTTCCAGAAGTTTGCAGAAAGAGATGCTAAAAAAGAAGCAGAGCAGGCAAAGAAAGAGCCTGACAGTGCAATGGAGATCGAGGAAAATGGTGCTCAGGAGCAAACTGCAGCATAAGGAGGGTGCTAACTCtggtgtgcttgtgtgtatatttcattttttaagatatttttttgtaCCTGCTATAAATTGTTCCTCAGAGATGAGTGCGCGAGTGTGCTTGTAAATTCGAATGTCTGACCTGGATGTAGATTATCGTTTGCTTTCTGCCCTTCCTCTAGGCCTTGCTGGCAGAGTCTGCATTGAAActgtttgtaaatgtgtttgtgaGGCAGCTAGCTGGCCCAGCTTTGTACTGTGCTGCTACTCTGTGTGGCGTGAGCAAGGTGTAAGATTTGAAGGTTGTAAATGCTGACTACAGCCCTATTCATCTAATAGCCAATACTGCAGCCTTTGATTCTGGCCTGATGCCAGATTTTGGAGCATCGTTATGTAGCGCTGCTGTACTGTTTAGAACATTTTCTGTTCTGCTGGTAAACCTaaaatgcatggaaactgtCGGCAGGGCAACAagactgtttgtttttttggtattaATGATCTTTATGGTTTGTATGCATTTGATATCTATGTATTTCTATCACGGTTTACTGTCCATAGAGTTGTTGAGCTGTATGATTTGCATTCTTCTAATTGGACTTCTAACGTTTGACTCTCATGAACTCTTTATGATAAGACAACCTACACACAGGAGCTTTTCACCAAGGAGAACGTCTGAGTGACTGCACTTAATGTTTCTTCTGAGTGTAGCGCGTTTACATGAAGTTTTTACGGGCAGGTGCGGAGAACATCTCTGAACTGACCTAGTGAAACTTTTTGTTCCAGTCTGCTTTACTTTGCGTTCAACACAGTTTTGTCGAGTGTGTTAATGTTAGACCCGAGTCAACTTGGACCAGGATCCTGGATAGCAGCTTCTTCTGGAAAACAAAACCTACCCAAGTTTATGGAACAGACTGGAAATGACCATAAACATGCCTCTCAGCTGTCCTGTATTATAGACATCCCTGCTGGCAACAGATTATGTGGAAGAGCAAGAGACACACGAATGAGTAGCTCTGATCAAGTCTCACTTGCTCCACAATTTTGAATAAAAGAATAAGAGCTA

Function

GO:

id name namespace
GO:0000413 protein peptidyl-prolyl isomerization biological_process
GO:0006457 protein folding biological_process
GO:0016020 membrane cellular_component
GO:0005528 FK506 binding molecular_function
GO:0003755 peptidyl-prolyl cis-trans isomerase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212428 lncRNA upstream 15405 7245764 ~ 7248460 (+) True G156697
TU212379 lncRNA upstream 92240 7168208 ~ 7171625 (+) False ptprq
TU212321 lncRNA upstream 233157 7026598 ~ 7030708 (+) True G156623
TU212237 lncRNA upstream 394301 6868260 ~ 6869564 (+) True G156562
TU212190 lncRNA upstream 489133 6768942 ~ 6774732 (+) True G156523
TU212484 lncRNA downstream 80086 7351997 ~ 7412688 (+) True G156731
XR_002651235.1 lncRNA downstream 117195 7389106 ~ 7398357 (+) False LOC111194759
XR_002651234.1 lncRNA downstream 117195 7389106 ~ 7398357 (+) False LOC111194759
XR_002651231.1 lncRNA downstream 117195 7389106 ~ 7398357 (+) False LOC111194759
XR_002651232.1 lncRNA downstream 117195 7389106 ~ 7398357 (+) False LOC111194759
XM_015604482.2 mRNA upstream 21883 7230927 ~ 7241982 (+) True washc1
XM_022679969.1 mRNA upstream 92983 7093507 ~ 7170882 (+) True ptprq
XM_022679517.1 mRNA upstream 176282 7031903 ~ 7087583 (+) True LOC103039382
XM_007244041.3 mRNA upstream 237920 7017514 ~ 7025945 (+) True LOC103045026
XM_022679515.1 mRNA upstream 279728 6947453 ~ 6984137 (+) True LOC103044721
XM_022679522.1 mRNA downstream 3042 7274953 ~ 7315555 (+) True LOC103040627
XM_007244053.3 mRNA downstream 52589 7324500 ~ 7358192 (+) True c2cd5
XM_007244056.3 mRNA downstream 52589 7324500 ~ 7358192 (+) False c2cd5
XM_007244058.3 mRNA downstream 52589 7324500 ~ 7358192 (+) False c2cd5
XM_007244060.3 mRNA downstream 52589 7324500 ~ 7358192 (+) False c2cd5
TU211750 other upstream 2106465 5157154 ~ 5157400 (+) True G156188
TU211262 other upstream 4508753 2738361 ~ 2755112 (+) True G155776
TU210855 other upstream 5994486 1265820 ~ 1269379 (+) False G155491
TU212485 other downstream 100465 7372376 ~ 7431568 (+) False LOC111194759
TU212490 other downstream 115591 7387502 ~ 7404556 (+) False LOC111194759
TU212659 other downstream 328656 7600567 ~ 7606668 (+) True G156840
TU212948 other downstream 1298019 8569930 ~ 8570877 (+) True G157055
TU213377 other downstream 2668918 9940829 ~ 9941805 (+) True G157383

Expression Profile