RNA id: XM_007244058.3


Basic Information

Item Value
RNA id XM_007244058.3
length 4381
RNA type mRNA
GC content 0.49
exon number 28
gene id c2cd5
representative False

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 7324500 ~ 7358192 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCGTAGACCCGCCTACCTGTCGCCGTTGGCAAGTAACGCCACTGCGGGTGTTTATCTCCGGTTAGCTATCTTTAATCGCAAACTTCAGGATTTATAGCGGATTTTCCAGCGTacagacatgttttttttaagtagtagCGGAGGCTGTGCAGCTCTGTTCCAGGCTTTTGGGTCAAGAATTCTGTTTTAATTCGTGTTATGGGCTCGAAAGGCACGCTAGGCCGATGGACCGACTGTAACGTCAAATTGAAAACGCTGCGCTGTTCTGCAGCTTTTCTGAAGCGCCAGGATCCGGTCTGGTCAAGGTAAACAATGCCGGGGAAACTGAAGGCCAAAATAGTGGCGGGCAGACATCTGCCCATCATGGACCGTGCAAGTGACCTCACTGATGCCTTTGTGGAGGTGAAGTTTGGAAACACAACTTTTAAAACTGACGTCTATCCTAAGTCCCTGAATCCTCAGTGGAATTCAGAGTGGTTCAAGTTTGAGGTGGATGATGAGGATTTGCAGGACGAGCCATTGCAGATAACTGTTCTGGATCATGACACATACAGCGCTAATGATGCCATAGGGAAGGTTTACATTGACATTGACCCACTACTTTCCAGTGAAGCTGCTACAGTCATCTCTGGCTGGTTTCCCATCTACGACACCATTCATGGTATTAGAGGAGAGATCAATGTGCTTGTCAAGGTGGACCTCTTCAATGACCTGAACCGATTCAGACAGTCTTCCTGCGGAGTCAAATTCTTCTGTACTACGTCAATTCCGCGATGTTAccgtgctgtcatggttcatgGCTTTGTGGAGGAACTAGTGGTCAATGAGGATCCGGAGTACCAGTGGATTGACCGCATCCGAACCCCACGAGCTTCCAATGAAGCCCGGCAGAGACTCATCTCTCTTATGTCTGGTGAACTCCAGAGAAAGATTGGTCTGAAGGTTCTGGAAATGGGTGGAAACGCAGTGGTGGGCTACCTCCAGTGTTTTGACCTGGAGGGGGAATCCGGCCTTGTTGTTCGTGCCATCGGCACCGCCTGCACACTTGACAAAATCAGCAACACATACGCACCTGCATCAGCCATTAACCCATGTAACTCGTCTCCATCCAAAGATACAAAAGActcTCCGCAGGCTGTTCCTTCCGCTCTTGGATGTCGCTCCACTCACAGCAGTCCGGTTCACAGTGCAAGCAGCCGCCTTTCTCAGGGCTTCTCCGTTTCTGTGCCAACCCTGCTGTTCGCCGGTATGGGCAGTGGGGGCAGTGCAGGGAAGGAGGCAGGACCTCTTAAAGCACTTTTAAGGCAACAGACCCAGTCAGCTTTGGAGCAGAGGGAGTTTCCTTTCTTTACCCTGACCAGTTTCCCTGCTGGTTTTCTGCTGCATGTGGGTGGAGTGGTCAGCGCACGTTCAGTCAAGCTTCTGGATCGAATCCACAACCCTGCCTTGGGTAACACCAGATCATACAAACTGCTAGACTGGAATAGTTTCACCGCAGatgaGCCAGAAACACGAGATGCGTGGTGGGAGGAAATTCGTCAGGAGATTAAGTCTCATGCTAAAGCTCTGGGCTGCCATGCTGTGGTGGGATACAGCGAGTCCACTAGCATCTGcgAAGAAGTGTGTATCCTGTCTGCGTCAGGCACAGCTGCTATCCTCAGCTCTCGCTTCATGCAAGACGGTGCCCTGGACGTGGATCACAGGTTTGAAGACCTTGCGCCCCCTGGCTGTGGATTTTGTCACATACCGTATGATGAGTTGAACATGCCATTTCCAGCTCAGCTCACATACTGCCACTGCTGCCGGCGCTTTAAAGTCCCAGATGTGCTCTTCACTACTATAGACCTGCCTACTGAAGCCAATGTTACTGGCAAGGGTTGCCTTATACAAGCCAGATTATGTCGGACTAAAAAGAAGGCTCAGGGGGAAGGAAATGCCACATCCATTAGTAATTTGTTGCCATTTCTGGAGTACGAGCTGCACACGCAGCTGATGAACAAGCTGAAGCTGCGCAGCATGAACGCACTATTTGGTTTGCGCATTCAAATCAGCATTGGAGAGAACATGCTGCTGGGCTTGGCTTCTGCTACAGGGGTGTATCTGACTCCGCTACCCAGTCCAGGAGGAATCCAGATAGCAGGAAAGACCCCGAGTGACATCACATACGAACAACACATCTCAAACATGCAGAAGAAAATCAATGACACCATTGCCAAAAACAAGGAGCTGTATGAGGTCAACCCCCCGGAACTTGTTGAGGAGGTGATTGGCTCTCCTATCCCTGAACCCCGGCAACGTTCCCGGCTTTTCCGCTCCCACTCGGAGAGTTCAGACGAGGTGTCGGAGTTAGACCTGTCTCACGGAAAGAAGGATGCTTTCGTTCTAGAGATTGACGACACAGATGCTGTTGAAGACATTCACTCCCTCCTCactgatgccccaacacctCCAGGGTTTTACAGCTGCAATACTGAAATCATGCCTGGGATTTATAACTGGACTTCAGCTTTACAGATGTTTACATCTGTAAGAGTCTTCCGCCTCAGCAATGTAAACCTCACTAATCAGGGCCTGAATAAGGTGTTCAATGACCTCTGTGAGAATCTCCTTAAGagCCTGTACTTTAAACTGCGCTCCATGGTGCCCTGCTGCCTCTGCCATTTGAACTTCACTGTTGCTGTGCCTGAGGATGAGCTCATACAGGTGGCAGTGACAGCAGTGGCGATGAGCTTTGATAAGGAACAGACTCTGGAAAATGGCAGACAAAGCTGCGACAAGACGCTTATGAaagCCATTACAGAAAACGAAGAGCAGCTCCAGTTCCCTCTAGAGCTCACTGCTGAATCCTCCTCCAACCCTCTGAGCTCTGCCAAAGgtcTGTCGGAGGTTTCAGGTGCTCTGCCGAGCGCTCGGGCCCCCTCAGTTGATTACAGTTCCTTTACAGACAGATGCAGCTCCTGGATAGAGCAACTTAGACTGAAAGCTCATACCATAAGACGCGGATCAATTAAAACAATGTCCTCTCTGGAGAAGGCCAGTCCGCTGCCGGAGGGTCGGTCTCGCTCTCTCAGGTCGAATCGGTCCTACGCTGGAGGCTCTGTCGCTGTGGTCAAGATGACTCCGCTCTCTTTTATTCCTGGAACGAAAATAATCAAGTACCTCGGCATCATCAACATGTTCTTCATCAGGGAGACCACTTCACTACGGGAGgaGGGTGGGGTGAGTGGCTTCCTGCATTCGTTTATAGCTGAGGTCTTTGCTATGGTACGAGCCCATGTAGCTGCTCTGGGTGGAAATGCTGTTGTGTCCTACAGCAtgaaggagtgtgtgtttatggagaaTCCTAACAAGAAccagGCTCAGTGCCTTATCAATGTCAGTGGAGATGCCGTGATCTTCGTCCGAGAGTCTGAGCTCGAGGCCACGCCTCCACAGCCTCAGTCAGCGAGCACACAAACCTCCAGCAGCGGAGAGGGAACATGAGAATAAACACATGgtggacacactttctctctgtaaCCTTAAACACATCTGTCCACTCCAAGTCTAACAGGTTTAGTATCTGCCTCTGCGGTACCAAACAGAACATCCAAAGATAAAGTAAAGATAATTTTTAAGGTGAACTCAAATAGAGTGATTGCAGTGTTTTATGCGGCATACTCAAGAAATTACCTTTCACATCCATGTTGATCCATGACAAACAAGGTGAATCTTCTActgaaaacccttttttttttaaggaaaatcGCCATGCTTCCATTCATCGGCCATGCTGTACACATTCCGTTCATCCTAGAGAAGCCTGGCTGAGGCAGCTAAGATATAAATGACGTTATTAGAGTGTGTGTCTTAAGTGTCAACATTGGGAGTCTCTCCGTGGCCATCTTTGTATTTTTCCACCAAAGGAATATAGTAAACGCACACACTCATGCCTACGTCCTACGTACAAAAAAATCCTGCCATGCTTAGTGTCATTTTAGACATCTCCCCTGAAGTACTACTGATCACATTTCAATCatgtgtaaaaagaaaatgctggaaatgttttttgtttttctctattttagTCCATGTGCCAGGCTGGCTGCATTTTCTGTGTTTAAGCAGTTTGAGGTCAATCTCTGTGATCCTGGTTTCTTATTCTTGCATGTGCAATGCCAGCTATTCCTTTCCTTACTCGGATACTAGGGTGGAGTGATGCCAAAAGCAAACTGCCCAGGAAAGACTTGAATGTACAGATGGAGGGGAAAAGGCCTACTGGCTGAACGAGGCTGGATGCTTGACAAATCCTCTGCTCATCTTTAGACTGATTGTCTACAAAAGTCTGTTTGCTTGAGGACAAATCAAATGGTGcacaataattaaaagtatGTATGTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212428 lncRNA upstream 76040 7245764 ~ 7248460 (+) True G156697
TU212379 lncRNA upstream 152875 7168208 ~ 7171625 (+) False ptprq
TU212321 lncRNA upstream 293792 7026598 ~ 7030708 (+) True G156623
TU212237 lncRNA upstream 454936 6868260 ~ 6869564 (+) True G156562
TU212190 lncRNA upstream 549768 6768942 ~ 6774732 (+) True G156523
XR_002651235.1 lncRNA downstream 30914 7389106 ~ 7398357 (+) False LOC111194759
XR_002651234.1 lncRNA downstream 30914 7389106 ~ 7398357 (+) False LOC111194759
XR_002651231.1 lncRNA downstream 30914 7389106 ~ 7398357 (+) False LOC111194759
XR_002651232.1 lncRNA downstream 30914 7389106 ~ 7398357 (+) False LOC111194759
XR_002651233.1 lncRNA downstream 30914 7389106 ~ 7398357 (+) False LOC111194759
XM_022679522.1 mRNA upstream 8945 7274953 ~ 7315555 (+) True LOC103040627
XM_022679521.1 mRNA upstream 52589 7263863 ~ 7271911 (+) True fkbp4
XM_007244043.3 mRNA upstream 52589 7263865 ~ 7271911 (+) False fkbp4
XM_015604482.2 mRNA upstream 82518 7230927 ~ 7241982 (+) True washc1
XM_022679969.1 mRNA upstream 153618 7093507 ~ 7170882 (+) True ptprq
XM_022679529.1 mRNA downstream 92 7358284 ~ 7371895 (+) True LOC103040931
XM_022679528.1 mRNA downstream 2863 7361055 ~ 7371895 (+) False LOC103040931
XM_022679530.1 mRNA downstream 2863 7361055 ~ 7371895 (+) False LOC103040931
XM_007244067.3 mRNA downstream 87951 7446143 ~ 7454434 (+) True LOC103026191
XM_015604457.2 mRNA downstream 166933 7525125 ~ 7540255 (+) True LOC103026791
TU211750 other upstream 2167100 5157154 ~ 5157400 (+) True G156188
TU211262 other upstream 4569388 2738361 ~ 2755112 (+) True G155776
TU210855 other upstream 6055121 1265820 ~ 1269379 (+) False G155491
TU212485 other downstream 14184 7372376 ~ 7431568 (+) False LOC111194759
TU212490 other downstream 29310 7387502 ~ 7404556 (+) False LOC111194759
TU212659 other downstream 242375 7600567 ~ 7606668 (+) True G156840
TU212948 other downstream 1211738 8569930 ~ 8570877 (+) True G157055
TU213377 other downstream 2582637 9940829 ~ 9941805 (+) True G157383

Expression Profile