RNA id: XM_007244078.3


Basic Information

Item Value
RNA id XM_007244078.3
length 1652
RNA type mRNA
GC content 0.47
exon number 11
gene id LOC103029792
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 7690215 ~ 7702248 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tgtgagaaagaaggTGGAGCGAGGTGTGTAttagagagggagtgtgtgagttCTAGTCAGGTGTGTTCCAGTCAGGTGGAGAAGAGAGGGCAGGGAAAGGCAGgGCGATGCTCAGTGACTGGTTTTGGTGGGATCGTCTGTGGTTGCCTGTGAATGTAACATGGGCAGACCTGCAGGATAAGGAGGGACGCGTGTATGCTCATGTACACCATATCTATATCGTTTTTCCAatagcagtgctgctgctgGGCCTTCGAGTCCTGTTTGAGAGATTCATTGCCCCACTTATCGCTGAAGCCTTTGGAGTGAAAGACAAAGTCCGGCCAAGAGTGTCACACAATCCTGCACTGGAACAGTACTACAGAACACACTCCAAACACCCctcacaggcagaTGTTAGAGGCCTTAGTAAAAAGCTGACCTGGACAGAGAGGCAGGTTGAAAACTGGTTTCGTAGAAGAAGAAACCAGGACAGACCAGGAGTGCTGAAGAAATTCAGAGAAGCCAgCTGGAGGTTTCTGTTTTACCTGTGTGCTTTCCTGGGAGGCCTGCTGGCTCTGCATGACAAACCCTGGTTTTATGATTTACGGGAAGTGTGGGCAGGATTTCCCAAACAGacCCTGCTGGACACTCAGTATTGGTATTACATGtttgaaatgagtttttatggCTCCCTCTTGTTCAGTGTGGCGGTGGACATTAAACGCAAGGATTTTAAGGAGCAGCTGGTGCATCATTGGGCCACTCTGACACTACTGTCGTTCTCTTGGTGTGCAAACTACATCCGCATTGGGACTCTAGTCATGCTGGTGCACGACGCCTCTGATGTTTTACTAGAGTCTGGGAAGATGTTTAATTATGCAGGATGGGAGCGTGCCTGCAACTGCATCTTCGTCCTCTTCACTATTGTATTCATGGTGACCAGGCTGGTCATcttccctttctgGTTGATCCACTGCACGTGGGTGTATCCTCTAGACCAGTTTCAGCCATTTTTTGGCTATTATTTCTTCAACATCATGCTGGTGGTCCTACTGCTGCTACATATATTCTGGGCCTCCCTTATTCTACGCATGGTCAAAAAGTTTCTGTTTGGAGAGATGAAAGGAGATGAAAGAAGTGACGAGGAAGAGGAGGACAGTGCGGATGAAGATCACAACCACAAGCGATTTGTCGGCTCTTCAAATGGACTCTCGAATGGTCATTGACAGCCAGAGTGATACGAGTCCTTCAGTGTCAAGCGCCTTTATGTCCATATTGGACACTCCGATCACTCATTAACTGATTATGTTCTGATTATATTCAGTATATCCATAGCCTTTCATTTTAAGGTGTGTATATGCACATGATGCTGGTTTAGAATAGTGAAGCGCTGCTGTGATGCCTCCTTGTCATATCTTCTTGGATTATCTCCTCCTGCAGCAGCCTCCATGTTCTTCTGTCCTCCtcatccctcctcctcctctcagcCTCTCACCACCTACAAGTATGAAACAGCACCTCCTACTGGGTCCTGAGGAGGAGTGCTGTTACATTTTCAGGACATGTCATCACTTTCTCACCAGACTGCTAGAAGAAGTGCCAGTAtagatataatgtaatataagaaGGTGCCCAAAGTCCCTTTAGCTCAATAAAGGATAAAGAACTTG

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212636 lncRNA upstream 131258 7553653 ~ 7558957 (+) True G156824
TU212487 lncRNA upstream 259634 7426825 ~ 7430581 (+) True LOC111194759
XR_002651231.1 lncRNA upstream 291858 7389106 ~ 7398357 (+) False LOC111194759
TU212683 lncRNA downstream 49955 7752203 ~ 7755664 (+) True G156856
TU212684 lncRNA downstream 50084 7752332 ~ 7755664 (+) False G156856
TU212767 lncRNA downstream 134507 7836755 ~ 7844894 (+) False G156916
TU212769 lncRNA downstream 134507 7836755 ~ 7841481 (+) True G156916
TU212771 lncRNA downstream 134507 7836755 ~ 7837772 (+) False G156916
XM_007244076.3 mRNA upstream 1041 7656501 ~ 7689174 (+) True LOC103029157
XM_022679539.1 mRNA upstream 35166 7613959 ~ 7655049 (+) True vwf
XM_022679540.1 mRNA upstream 35166 7618317 ~ 7655049 (+) False vwf
XM_007244072.3 mRNA upstream 109010 7572151 ~ 7581205 (+) True LOC103028022
XM_015604457.2 mRNA upstream 149960 7525125 ~ 7540255 (+) True LOC103026791
XM_007244079.3 mRNA downstream 10515 7712763 ~ 7718714 (+) True LOC103030109
XM_007244080.3 mRNA downstream 10515 7712763 ~ 7718714 (+) False LOC103030109
XM_007244081.3 mRNA downstream 18251 7720499 ~ 7726950 (+) True LOC103030643
XM_022679545.1 mRNA downstream 53494 7755742 ~ 7770303 (+) True terb1
XM_007244092.3 mRNA downstream 81388 7783636 ~ 7798009 (+) True LOC103034665
TU212659 other upstream 83547 7600567 ~ 7606668 (+) True G156840
TU212485 other upstream 258647 7372376 ~ 7431568 (+) False LOC111194759
TU212490 other upstream 285659 7387502 ~ 7404556 (+) False LOC111194759
TU211750 other upstream 2532815 5157154 ~ 5157400 (+) True G156188
TU211262 other upstream 4935103 2738361 ~ 2755112 (+) True G155776
TU212948 other downstream 867682 8569930 ~ 8570877 (+) True G157055
TU213377 other downstream 2238581 9940829 ~ 9941805 (+) True G157383
TU213920 other downstream 4660203 12362451 ~ 12366770 (+) False LOC103031933
TU214078 other downstream 5033384 12735632 ~ 12740999 (+) False hsbp1
TU214177 other downstream 6031697 13733945 ~ 13736102 (+) True LOC107197649

Expression Profile