RNA id: XM_007244087.3


Basic Information

Item Value
RNA id XM_007244087.3
length 909
RNA type mRNA
GC content 0.50
exon number 8
gene id odf3b
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 7862072 ~ 7866578 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aaacaatcaCAGCTGAGCAGTGGATCTCCTGCACGTGCTTCGTCTGGAGGGCCGTGAGTTGAGTATCCTTATCTGCAAGCTTCAGTATGCCAGAAGAGGAAGTATGGGTAGGTTCCTGGAGGCCCCATAGGCCAAGAGGTCCTATTGCTGCCCTGTACAGAAGCCCAGGGCCTAAATATGGCCTCCCAGCGGTCACAGGAATAAATGATCATGACCCACGGAAGAGGAAAGCTCCGGCATTTAGTTTTGGCACACGGcataagcagttcagcttgagcTGCTCACCAGGACCGGGCCACCTTGTTCCCTCTAATATTACCAAAGTTGGACGAGATGGAACCCCAGCTTATTCACTGTACAGCCGACCCAGAGACCCTAAGCCTTTTCAGACTCCTGGGCCAGGGAAATATTCTCCTGAAATCTCAGGGAAGACAACTTTTTACTCTGCCCCTGCGTACTCACTATCAGGGAGAAGCAATGGGTATCGCAGGGACCAGTCACCAGGCCCTGCTGCATACATGCTCCCTAACGTGATGGGCTCAAACACTGTGAGTAAAAGATCTGCCCCAAATTTCTCCTTCTCGGGCCGTTTAAAAGTAGGCAGCTTCCATGAGGATCTGCAAAAGACTCCGGCTCCAGGGACATACAGCGTTGTGGATCCAAACATTTACACTCCCAGGTCTCCTCACTATAGCATGACTGGCCGCAACATGATGCCTGGAGACACTACCAAGAAACCAGGACCTGGAACTTATTGTCCAGAACAGGTGACTTTTACACGACTCAAAGCTCCCAGCTTCTCCTTTGGCATCCGTCACTCTGAGTACACTGCACCACCAATCATTGATGATTGTTAATTAttaaactcaGTATTTTCCCCATAATAAACGCTCTGTTGTGCAGCGGATA

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212780 lncRNA upstream 1432 7846615 ~ 7860640 (+) True G156917
XR_001518589.2 lncRNA upstream 12194 7846483 ~ 7849878 (+) True LOC107197493
TU212776 lncRNA upstream 17178 7836755 ~ 7844894 (+) False G156916
TU212779 lncRNA upstream 17178 7836755 ~ 7844894 (+) False G156916
TU212778 lncRNA upstream 17178 7841684 ~ 7844894 (+) False G156916
TU212909 lncRNA downstream 489640 8356218 ~ 8357077 (+) True G157019
TU212912 lncRNA downstream 494942 8361520 ~ 8361750 (+) True G157022
TU212918 lncRNA downstream 566036 8432614 ~ 8438269 (+) True G157027
TU212945 lncRNA downstream 699851 8566429 ~ 8567668 (+) True G157052
TU212947 lncRNA downstream 701666 8568244 ~ 8568463 (+) True G157054
XM_015604460.2 mRNA upstream 1562 7851925 ~ 7860510 (+) True LOC103032733
XM_007244089.3 mRNA upstream 26346 7830102 ~ 7835726 (+) True LOC103033491
XM_022679547.1 mRNA upstream 33510 7824010 ~ 7828562 (+) True LOC107197496
XM_007244092.3 mRNA upstream 64063 7783636 ~ 7798009 (+) True LOC103034665
XM_022679545.1 mRNA upstream 91769 7755742 ~ 7770303 (+) True terb1
XM_022679549.1 mRNA downstream 8446 7875024 ~ 7880960 (+) True rabl2b
XM_022679551.1 mRNA downstream 424584 8291162 ~ 8301780 (+) True LOC103028908
XM_007233848.3 mRNA downstream 557088 8423666 ~ 8432053 (+) True arsa
XM_007233845.3 mRNA downstream 600295 8466873 ~ 8474471 (+) True pgc
XM_022679552.1 mRNA downstream 628262 8494840 ~ 8507495 (+) True chkb
TU212659 other upstream 255404 7600567 ~ 7606668 (+) True G156840
TU212485 other upstream 430504 7372376 ~ 7431568 (+) False LOC111194759
TU212490 other upstream 457516 7387502 ~ 7404556 (+) False LOC111194759
TU211750 other upstream 2704672 5157154 ~ 5157400 (+) True G156188
TU211262 other upstream 5106960 2738361 ~ 2755112 (+) True G155776
TU212948 other downstream 703352 8569930 ~ 8570877 (+) True G157055
TU213377 other downstream 2074251 9940829 ~ 9941805 (+) True G157383
TU213920 other downstream 4495873 12362451 ~ 12366770 (+) False LOC103031933
TU214078 other downstream 4869054 12735632 ~ 12740999 (+) False hsbp1
TU214177 other downstream 5867367 13733945 ~ 13736102 (+) True LOC107197649

Expression Profile