RNA id: XM_007249142.3


Basic Information

Item Value
RNA id XM_007249142.3
length 3902
RNA type mRNA
GC content 0.49
exon number 17
gene id LOC103024336
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 17625054 ~ 17645249 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTCTGACAGCACTGCACAAAGTATCCAAAACAAACACTCAGCccattgtgtgtgagtgtgtgtggggtagggtgtgtgtatgagtgtgtgtgagtaagtgagtgtgtgtgtgattcagaATCCACTGGTTAAATCATGTGAATCGGATTTTTCTCCTCAGCTCGACCTTCGTACCGGGACTTTAACCGCAGGGCAGCGCGGGGCCGGGCCGCGGCTCCCCCGGATGAGCGTCGTGTTCCGCGGGGTTGTGGTTTGCGGCTGAATGGCGGAGCGAAGTTTCACAGGAAAACTTTAACAGAAACTCGGGCTCGGCTCTTCCTCTCAGCGAACCGGAGGAGCAAAGCGGCGCTTTTCCGTCTCTGCGACGATGAAGAGTTTAAAACAGCGCCTGAAGAAACACGAACTGTCTCCCAGTAGCTCAGAGTGGAGCAAGTATGACGAGCGTCTGCTGAGAGCAGTGGAGAACGGTGACATAGACAGAGTTACCGCCACGCTCAAAAAAGGAGCCATCCCCACCAGACTTGATGCTGAAGGCTGCTCTGCACTTCACCTAGCTGCCAGCAAGGGTCTAATAAATAGCCTCAACGTTTTCCTTGGCCATGGGGTGAACCTGCACGCAACAGATGCTTCTGGTAAAACAGCGCTGCATCTTTCTTCGGGAGGTGGACATTCAGCGTGTGTGCAGAGACTCCTGCAGtgtaaaagtcCTGTTGATAGCACTGATCTGCAGGGAAGAACAGCTCTGCATGATGCAGCATATTCAGGTCGGAATACCATAATCAAAATGCTGTGCGACAGTGGAGCGTCTGTCAGTGCTGTTGACACAGATGGCCGGTCTCCATTGTTGCTCGCAGCACAGATGTCTCATCCTCGAGCTTGCCAGCAGCTGCTACTCTGTGGGGCATCAACCAATCTCCgagacaaacaaaacaaGACAGCACTGATCCTGGCCTGTGAGCACCCCTGTCGTGAAGTAGTGGAGGTCTTACTGAAGAACAAGGCAGATGTTACAGCTGTAGACCTCTACAATCATGACCCTCTACACTACGCCCGACTAAGTAATGACCAGGTCCTGATTACAATGGTCCAACAAATCTTGGAGGCAGCTAGCAAAGCTCAAGAGGCTGCCAAGACTGCACAGAAACTACAGCAGCAAAGGTCAATGAATGCTGAAGCTCAAGCTCATATGATGAGGAAGCTGCCCGCACATGCACCAGTTAAAGTCCCATCATCTGGCATCAGCTGGTCCAGCACAGGAGTTCCTCCACAAAAACTGGAGAAGGTTCCAGCACAGCAGCATTCTAGAGAACACAGCAGCCGTTCTCCAGATGGAAAAGATGAGCCACAGGCTCCTTTGGATTCTGCACAGGTTAGGCACTTTAGCCCTCATTCAGCATCTCCTGCATCAGTCGTTTTACCTCCCAGACCAGTGGAGGTGAGGGCTGGTGAGGTGGAGGTTCTGAGGAGGGAGCTGTGGCAGGCTAGACGAAGGCTGGAGGCAGCTGAGGAGGAGGTGCTGAGACTGGATGCGACACTGGCTCTGCGTGCACGTGAGTACGAGGACCTGCGGAGGAACAGCGAGCGTGCCCTGCAGGAGGCGCATGGCCGGTCCTGGGAGCTGGAGGAGGCGCTTGCGGAGGTGCAGCGCAGGATGGCTGGTTCGGAAGCCAGGGTGCGGCAGATGCAGGCCCACTTGGTGACTGTGCGCGAGAACCTGGTGGAGGAGCTAAGAGTGCAGCTTCACGACGCCCGTACGCACAGGGAGGCAGCAGTGGCCGAACTGGAGAGAACACGGGAGGAACTCGGGCACCACCAGAGGGAGGTAGAGGAGCAGAAGGAACGGAGTGGAGCACTTCTACAGGAGGTTCAAAGACTCACTGAGGAACTGCTAAGCAAAGATGAGCATACAAAAGCCCTCAAGGCGAGCTTGGCGAATTTGGAAGCTCGGAAAGCGCAAATGGCATGCAAGCACATTCAGACTCCCTCGGAATGGCAGCTAAAGTCTTCAAAGACCACAATGACAGATATTACCAGTGAGATTCTTCAACAagaaatggacaaaaataaCTACATCAGCAGAGATGAGCATACAAAAGCACTGAAATCTACTTTGGCTGCTGCAGAAGCTAAAAGAACAGAAATGGCTTGTAAAAATGTCCAGACCCCTTCAGAATGGCAGCCAGTATCTTCAAAGGCCACCATGACAGACATCACTGGTAATATCTTTCAGCAGGAGATGGGCAAAAATAACTACATCAGTATAGAAGAACACAATGCCATGAGGAGCTCCCTCAGTGCTGTGCTCCAGCAAGCAGAAAGTCGAGCTCAGGAGGCTCAGCAGAGGCAACAACAGGCCGAACAGGAGAACCTAGGCCTTCTTGCAGAGCTTCAGGAGCAAAAGACAGAGCTGGACACTCTCCAGGAAGCCCTACAGGCAAGGTTTGTGCCtgtagcactgctggaggagaaggagagggagCTGTCCCTGCTCAGGCTAACCCTgaaagagatggagaagagCAAGGACAAGAAACAGAACTTTGGGAAAACTTATAAGAAGCTAGAGGACACCAGGAATCCCACCACTGTTAAATCTCAGAATCAGCAAGTGtctcagaacagaagagaatcgTCTCTTAGTGGAACTCCGGAAGAAACCTCCGAAGGACAGCAAAAGgaagcagagtctgCTGTGGAAGCAGAGACCCAGAGGGAAAGTCAGGTCAGCTCATCAGCATCCAGCCGCCCCTGCAGACTCCAGCAATCAGAGAGCAGCACCCTGCAGGCACACATTAATAgcctgcagcagcagctagaGGACTCTGAAAGGCGGTATAGACGAGTTCTCGATATGTACCGTACACGTCTTCTGAATGCTGCACAGGGTTACATGGATGAGGAGGCCAGGATGGCACTGCTTCAGATTGCCCAGATGAGACAGGAGTGTGTGTATTGATCATCACGTGTGGACACGCCTGTCTGAATATGCGTTTCTGTGTGCACTAATACACGTGAGCACTGATTAAGTCCTGTGGAGTACGTTTACGTTTAAAGGCACATCTGGAACATCAGTGAACAACGATGATCCATGTAATTTAGATCGCTGTTGGATTTAGTCATGAgtcattaattaagagaaacatttagattagatttgtattgtaaatttgtttttttacagtctgtacATTTCATACTTACATGCCTCACTAATGCGTTTTTATGTACCTGGTGTCCAATTAATTAATCCAATTAATGATTGAACTAAtcacattatatacagtataatacaatactgtatgtattttactgtatgtataaagTTTGTATGTAAGTATAATGATGTGTATGAGTAGTTACTCTACAACTAatacaacaaatataaaaaaaaggatttaaaatATGTTCCCCTTTGATGATTTTCTTCAAAGCAAAGCCAAGTCCACAGTTAATATGTGAACCGTATGTCATTTCCATCACACTGACAGACCTTTGGGGAATTCGTCAGATCCAGTCACGGTGTTTGAGTCAGGTTTCTTAATCATAGGTTTGTTTGATGTGTTTCGTCATGCTGCTGCTGGACATGCTGAAGGAACTGGACTGCCCTCTTGTGGCTCGTGCTACAAACCTGTTTACCTTTTAGTAAGGAGGGAAGTTTTTACATTCCTGTAATAAATATCATGTTTTAGTTTGATGTCAAACCCACCTTTATACATTAGTACAGTCTGGAGGGTCTAGCTTTAAAGTGGCGTGTAGTCTGGAGATGCTCAACATTTTTGTAATATGTATTTCTTCAAGAGTAATGGACTCCTGTAAGAAGGATAACAGTGTTTTTGCACAGTCAGTTAAATTTACTCCCTTGACCGCCCCCCTCACCCcagtaataaaaagaaaaaagtttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU215567 lncRNA upstream 25700 17596059 ~ 17599354 (+) True G159028
TU215551 lncRNA upstream 168077 17455315 ~ 17456977 (+) True G159017
TU215548 lncRNA upstream 173722 17448832 ~ 17451332 (+) True G159014
TU215532 lncRNA upstream 253033 17328370 ~ 17372021 (+) False smad6
TU215533 lncRNA upstream 296857 17327253 ~ 17328197 (+) False smad6
TU215675 lncRNA downstream 224758 17870007 ~ 17870468 (+) True G159115
TU215685 lncRNA downstream 281739 17926988 ~ 17931371 (+) True G159120
TU215686 lncRNA downstream 285387 17930636 ~ 17931371 (+) False G159120
TU215684 lncRNA downstream 286215 17931464 ~ 17938088 (+) False G159120
TU215688 lncRNA downstream 297067 17942316 ~ 17946683 (+) True G159122
XM_007249144.3 mRNA upstream 2926 17610877 ~ 17622128 (+) True morf4l1
XM_007249145.3 mRNA upstream 20505 17577392 ~ 17604549 (+) True LOC103025173
XM_022679679.1 mRNA upstream 53137 17563875 ~ 17571917 (+) False LOC103029280
XM_022679682.1 mRNA downstream 118442 17763691 ~ 17797748 (+) True LOC103039437
XM_007255977.3 mRNA downstream 303881 17949130 ~ 17958434 (+) False ddb2
XM_007255975.3 mRNA downstream 303881 17949130 ~ 17958434 (+) True ddb2
XM_007255976.3 mRNA downstream 303888 17949137 ~ 17958434 (+) False ddb2
XM_022679687.1 mRNA downstream 319134 17964383 ~ 17968936 (+) True kbtbd4
XR_002651250.1 other upstream 435803 17177675 ~ 17189251 (+) False zwilch
XR_002651251.1 other upstream 435803 17177675 ~ 17189251 (+) True zwilch
trnal-cag_11 other upstream 861446 16763526 ~ 16763608 (+) True trnal-cag_11
TU215237 other upstream 1245231 16379259 ~ 16379823 (+) True G158779
TU214760 other upstream 2488856 15133947 ~ 15136198 (+) False LOC111194769
TU215929 other downstream 881137 18526386 ~ 18576437 (+) True necab2
TU215930 other downstream 881137 18526386 ~ 18576437 (+) False necab2
TU215931 other downstream 881137 18526386 ~ 18576437 (+) False necab2
TU216418 other downstream 2540267 20185516 ~ 20186919 (+) True G159666
TU216494 other downstream 3091349 20736598 ~ 20737049 (+) True G159728

Expression Profile