RNA id: XR_002651251.1


Basic Information

Item Value
RNA id XR_002651251.1
length 2776
RNA type misc_RNA
GC content 0.45
exon number 20
gene id zwilch
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 17177675 ~ 17189251 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGTAGAAAATATTGGAGCTAGGCTACTTTTACACGTTGAACCAAGTGAACCAAGCTTAGCTAACTTAGTTAATTAACCTAACTAAAAATCTGTATTTGAATGCACGGGCATTGTTAAATAACGCGTTAAAGACGATGAGGGATACAATTATTTCAGAAGCTAACAGCTTTATTCGGTTTCTCAAgtcATGTCAGGATGACAGCAAAGACTTCTGGACCTATCAGGACAATATAAGAATATTAAAGCAAAGCAATCAGCCTATCCTCAGCATAATTGAAGGAAATCAGGTTGTCTTTATTTGCGAGGAAACGCCACCAAAGCATGAGGAGGAGGTTGCAGTAAACACTGAGGAAAACAGCCTCAATGAAGAAGTGTCTGTTAAACTGGAGCCGTTTGACATTGGGCCACTACCTCTCACCATACATAGAGCAAGGCAGCTGCTATCCTGGTACACCATGTCTCAGAACCCCAACATGCCCCAGGTGGAAGCTCATGTACTGCCCCCTCTATGGGTACGCTGTGATATGTCTGACCCGGCTGGCGTTTCCTGGCTGGGGGCAGAAACGGTCTATGCTGGAAGCAAGGCTACAGCAGTCAAACTGTATACAGTCTGTTGCAAAGGAGCAACAACAGATGAGTCTTCTTTTATGACGATGGAACAGCTTAAACAAGAGCATCAGAACAGACACAGTTCCTCAGCAGTGGGAACAAAAGGCTGGGCTGAGTACAACCTCTTTTGCTCAGTAAAGGAGGAGAGCCTGGTTATTGATTCTCAAAGCAGCGTAACTGCCTTCTTCAGATGGGTTAATGTTGACAAGGTCCTGGAGACCCCTCCTCTGTCGTCTACAGTTACTCTGCACATCAAGGTGACAGTTGGAGATATCAGGAGCCCACTGTATCAAACCTACAGAGAGCTGGAATTCCTCCTGACACTGGCTGATGGATTGAGGACTGGAGAGATTGAGTGGTTGGAACCACTGGAGACACAGTCTGCTGTGGAATTAACCAGGATGCTTATTGAAGATCTGGATAAGGTTGCAAATGCAGTCCCAGGCCAGAATTTAAAAGGATCAGAGAATCAGAAGGCCAAGACAGACTCAGTACTGGGGTATGGCACCATGCTGATGGAGAGAGGGGACCTGGACTTCACAGAGCAGCTCTGggagaggatgaggaagaGTGTGACCTCATATCAAGACATAACAGATTCTCTGAAATTAGTCATCAAAGCTGTACGGTTTGGTCAGATTAAACCGTGGGTCCATAGGGCCAGCAGCAGTTCTCTGAGTAAGCTGATAGTGCAGTCCTACCAGCAGCAGGTGGACACAGTGCCTCTCACTGGCCTCACCCCTGCCATCATGCTTCTGGAGCTGGGCCTGGACAAGATGAGGAAAGACTACATCAACTACCTTGTTGGAAAGGAGCTGACCACTCTCAACCATCTGAGCTACTACCTGAGCAGTGATGTGGACCTACAGGAGCAGGTTATAAGACTGAAGAAACTGCACCACCTGCTGGAGATCCTGGGCACCTGCAGCAGCTTCCTCAACCTGCCTCACGAGCGCCTCTTCTTCTTCACTCAGTCATGTTTGCAGTACTACAAAGCAGCACCATACAATGAAGACCATGTGTTTGAGATGCAGTTCAAACCTGCTCTCATCAGCCACTTCTACCAAACGGAGCAGCCAATGTCTTGGGGTGTGGAGGTGTCCAGTGGACAGGGCTCACGAGAGGTCAAGACCTCCTTTCATCTCAGCGATAAACCTCTGGTGGATCACATCACATTTGACTCAGATCTGCCACTGGAGGTCACAGTgagtgcagaaaatgaaaaggcTGCATATTTCAGGACTATGGTTTGCTGCAGCCTGGCCAACTTCACTTAGCAGCTGGaggggcaaacaaagaaaactccTGTTAGCGGGCTAGGCTTATGAAGTTCTTTATTCTAGACCCCCACCAAAGCCTATGTCAGTCTTACTCTCGTCTTGGTTTGCATGCCAAACCCCTACTGACAAAAATGATGGCACAGAAAGTGATCATAGATCAGGTGGaaactttattttgtttgcCCCATCTAGTTCTATCCTCTCCTGGATTCACAGGGCAGTAGATCTGGTACTCTGGTACTGAGATACTGACCTGCAGCCAGGAGCTGGTTGCTAGAAGAGCACATCTCCTTGGCTTTCCTCTTCCAGTTCTCAACCTGCCAATGACATTTCAGGACATGTTATCTGTacagctgagtgtgtgtgcagtacaGTTGCACAGTGCATTAGTTAACTCTGTGGTTAATTCAATACTATAACTTTTGTTACTGTCTAGGTGTGTAACCAAATGCTCAAATTGGATCAGATTGATTCACATTAATGGCAAATTtggggtaaaaaaaagtaaacaaaatttattaaaaacatattcagTTTTTTCGTAATCTGATAGAAGGCAGGAGTGTAGGAAATGATGTGCATGTGCTACAGTGGATAATGTATTGTTTATTGGTTAGGGAGGGATAAGCTACCTTATAAAGATGTACCTTTTTCAGTAAAGTCTGAACTGTGTTCAGTTCAATAATTCAGTAATACATTGGTTAAAGGGTAAACAACATGTCCTAGTCAGCGCACTCTAGTGTATATAGTACTTATTCTTCTCTCTATGAATGTCTGTGTAACAAAGCTGCAgtattcttttacatttttgctcTCTTTGAGTAATACTGATTTGCTATATTTGTAAGTGTCTTGACCGTAATAAACCTTTCTTTATGTCTATAATA

Function

GO:

id name namespace
GO:0007093 mitotic cell cycle checkpoint biological_process
GO:0000777 condensed chromosome kinetochore cellular_component

KEGG:

id description
K11579 ZWILCH; protein zwilch

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU215382 lncRNA upstream 483 17173067 ~ 17177192 (+) True G158882
TU215379 lncRNA upstream 483 17174653 ~ 17177192 (+) False G158882
TU215388 lncRNA upstream 5451 17101612 ~ 17172224 (+) False map2k1
TU215396 lncRNA upstream 19224 17157142 ~ 17158451 (+) True G158891
TU215373 lncRNA upstream 93414 17083953 ~ 17084261 (+) True G158881
TU215516 lncRNA downstream 94216 17283467 ~ 17283882 (+) True G158991
TU215533 lncRNA downstream 138002 17327253 ~ 17328197 (+) False smad6
TU215532 lncRNA downstream 139119 17328370 ~ 17372021 (+) False smad6
TU215548 lncRNA downstream 259581 17448832 ~ 17451332 (+) True G159014
TU215551 lncRNA downstream 266064 17455315 ~ 17456977 (+) True G159017
XM_007249157.3 mRNA upstream 5447 17149820 ~ 17172228 (+) True map2k1
XM_007249158.3 mRNA upstream 246313 16921369 ~ 16931362 (+) True rab11a
XM_007249161.3 mRNA upstream 293520 16859893 ~ 16884155 (+) False slc24a1
XM_022679672.1 mRNA downstream 105956 17295207 ~ 17301682 (+) True LOC107197433
XM_022679673.1 mRNA downstream 105956 17295207 ~ 17301682 (+) False LOC107197433
XM_007249251.3 mRNA downstream 137849 17327100 ~ 17372206 (+) True smad6
XM_007249152.3 mRNA downstream 235967 17425218 ~ 17447793 (+) True LOC103027004
XM_007249149.3 mRNA downstream 268764 17458015 ~ 17492931 (+) True iqch
trnal-cag_11 other upstream 414067 16763526 ~ 16763608 (+) True trnal-cag_11
TU215237 other upstream 797852 16379259 ~ 16379823 (+) True G158779
TU214761 other upstream 2041477 15128368 ~ 15136198 (+) False LOC111194769
TU215929 other downstream 1337135 18526386 ~ 18576437 (+) True necab2
TU215930 other downstream 1337135 18526386 ~ 18576437 (+) False necab2
TU215931 other downstream 1337135 18526386 ~ 18576437 (+) False necab2
TU216418 other downstream 2996265 20185516 ~ 20186919 (+) True G159666
TU216494 other downstream 3547347 20736598 ~ 20737049 (+) True G159728

Expression Profile