RNA id: XM_007249184.3


Basic Information

Item Value
RNA id XM_007249184.3
length 4258
RNA type mRNA
GC content 0.48
exon number 7
gene id n4bp1
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 16512334 ~ 16530595 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAGGAGTGGATGGATGTTCAGCTCAGTGGcttttattgtgtgtgtttgcagctGAAGCAGTGTCGTGCGCTGATGACATCAGCGGGGTTTTCCGGGTGTGAGGGGTTGTCAGATGCAGCTCGAGGTCTGAGCAAAAGTTGCGATAGGAGACATCAGCATGCTCGCGTTCAGCCGAGGAGATGAGAGGAGCCGGTGAGCGGGTCATGAAGGGGGTGAGAGAGTTGGGTTATCTCGGCTCCTGTTTATAGCGCCGTTGCCATGACCAGAGCGGACTAAACGAGTCGAGAGAAGCGGGGAAAAATGTCAACAACGCGGCCCCTCCCAGGCATGAAGCGAAACACCGAGGTAAACTACTCCGTGCCGCCGGGGAGCAGCCACTCTCCGACCCCCAGCAGACACCCAGCGGAGCCCCTGACCGTGGACGAGTTCACAGTGCACGAGGACAGAGAGACTGAGTTAAAGTGCACGAAGCCTCGAGTCGAGAAAGTTTTCCAAGTAGCGTTTACAATCATCGGCCTGCTGGACCACACTGGAGCCCACGGGAGTAAAGATTCCAGACAGATCTGGCTTCAGCTGAAGGGGAAGAAAGAGGATGTGGCGAAAGCCAAGGAATTTGTGAAAGGACTGTGTGACCCAGAGCTCAAAAAGGAGGAGAGGTATCCAGTTGATATGCACTGCATCTTTGCGGGAGCTCGTGGCCTCTTTCTGGACCGGTTGCTACGAGACACCAGCGCAGAGGTCCATGTACTGGAGCCAGGGCGGCTGAGGCTTCTCGGGCGTGCCGAAGCCGTGGTGATGGCGCAGAGCCGCGTTCAGCAGTTCGTCACTCTTTTTCAAGAGAAACGCAGCTTGCCCGCTGACCGAGAGCCCTTGGTCAAGCGcacttttaagacttttgtaGAAGAGCGGGCAGATAAGTACACTATGGAATTGCTACTTCTGCCCAGCCCCCTAAAGGAGGAGCTCCTGGGCTTGGTGCAGAGGCCCACTCAGACTGATGCTATTATAGACCTGGATCAGGACCGCTCTCAGACCAGCACTCCTGTCACAGAACTCTCTAATCGTATCCTTGGAGCTACTTTCGAGGATAGAACGGCCAGACCCACACAAGACTTGGTGCTTAACGGACGGCCCACGCACAAAAGACGCTCATCAGAAAGTGAGCAGAGGGACACCAAGAGACAATACTCTCTGGAGAGGAGAGATGAAGAGCAGGACAGGGATAGGCAATATGAGGCCAGCCAGACACGGACCAAAACTCCTGCCAAAGGCACTCTACCACTGGAATCCATTGAGATTTTGGACGAAGGTGAGGCTGTGAGCCCAGAGACAAATCTGCGCTGCCTGGTGAACTTCTTTAGGAACATGGGCTACCAGCAAGAGGTGGTGGAGCGTGTGGTGAGGGAGACGGGGCAAACGGAGGACACTTACCTGCTGTTGGAGCGCATTGTTCAGGAGAGCCAGAGAAGCCCGGGCATGCAAGGAGTACAGTACACCTCAGGCTACGCAACTGATTCTTCTCCGTCTTTCAACACCAGCTCTATCTCCACCTCAACATCCACATATGCACAAGCTAAAGAGAAGGAGCGGTTGCAGGAGCGGGTGCAGGAGCGGGTGCAGGGCCGTGCTCTTACTGAGATCAAGTCCAAAGACAATATCAGGGTGCTCAGCACTAACGGCTTCAACCAGAAGAGGCAGCAGGCCATCATAGTTTTGGACGACGAGGAGGATGAAGACATAGGCAGAAAGTCTAGAACCGTGGGGCCGCTAGATCTCAAGTCTGACTCCAGGTTTGGTTACTTGGCGCGGGGTGGTTCTCAGACAGTGGGGCGCGTTCCTATGGAGACCGTGACCATGCTCCGCAGCTCATCACAAGGCCCTCCTGGTACAGAGACACGACCAAGCTGCTCCTACCAGACTATTGCTGGAAGGGTACTACTGCCTCACCCTGAGCCAACTGCACTTTCAAAACCCTTGCTTCTGACAGGGGTGTCTCGCTTTCAGCAGTCCTTACAGACACCATATAGGTTGGTCTTGCCGAATGAACCTGGCCGCCCCGAACTCCGACACATCATCATAGATGGCAGCAACGTGGCTATGGCACATGGACTACATCGAATGTTTTCCTGTCGTGGGATCGCCATCGCAGTGGAGGCGTTTTGGCAGAGGGGGCATCGAGAGATTACAGTTTTTGTACCCCAGTGGAGGCAAAAGAAAGACCCAACAGTAACTGAGCCACACTTTCTTAATCAGCTTGAGGATTTGCGATtactctccttcactccttccAGAGAAGTGTGTGGAAAAAGGATCTCCTCACATGATGACAGGTTCCTACTTCATTTAGCAGAGAAGACAGGAGGCGTTATTGTCACCAATGACAACATGAGGGATTTTGTCAAACAGTCTGATGCCTGGAGGCAGATCATCCAGGAGAGATTGCTTCAGTTCACCTTTGTTGGAGATCACTTCATGATCCCAGATGATCCTTTGGGAAGGTTTGGCCCTTCGTTAGAGCACTTCCTGCACAAGGATAGCCAACTAAGTCCTATGGCAGACCTACAAGTCATTCCCATGACTTATTCCCAGACACTTCCATCAGCAACACACGGCCCTTTCCCCTCGCAGCCCAGACAGCCTTCCCATTGGCCGCATTCTGGCCCACCCGACTGGCACCCACCTCGACCGTCCTCCTCTCCTCCCCCTTCTCAGCGGTCACCCTTAGAAACCACAGAGCTCAAGAGGAAGTTATATGACATCTTCCCCGACCACAAGCAGCGCATCGACTCCATCCTCAATGATAACCCGTACATGAGAGACCTGAACGCACTGTCAGGCCTCCTGCTGGGCTGAGCACTACACTTCGCTctgaaatgaacatttttaaaattaaagctttTGAATGTTATAAAATCTACAGTCCAAGTGGCGAATATTCAGTGTACATATTTATAAGAAGAAACATTACTCATAATTTATgttgtaaacaaacacaaaagacGAAATCTTTGTTCTAAAAGGTGTTTTAGCCACACAGCTGCTTTTTTGTTTGAAACTGGCTTTGCTACAGTAACTGGTGAAGGACTCTCAACTTAacgttctttttttctgtctttatttaatttcctgtttttggtatgtttgcCAGTTCATGGACAACATATTGATCTGTTTTGAGTAGCCTCATTGATTCTTGTTTTCTTGTAGTGTACAGTAGGCTGTAAAATAGAGTATATTGATTAAAGTGCCCCCACTGAAGTGCCCTGAGAATCTGGAGAGTACGGACCTGCTCACTTGATCTCCCACTCTTTTACAATGTATAGTTCTTCAGGGGTAATGAAGGAGTAAGCGTTTGTCTGGACACCCCACCCAAATGATGCAGttttatcttcttcttttttatatataatggaGTACATTCTGAACGCTTTAAAAGTTTCTCAGTACTTAGTATCATTACACAATTTTTTCTTGGTACTCCCTCTTCCTTCTCTGGATTGTGCAACGCTTCCATGTTACCTTGAGTGATTTCAAATGTGAAACTGCTGTGCTGACCTAAATTTCTTTATCAGTGATTAAGTTCACCAGCAGGGGGCAGTGTGAGTGTAAAACATCTTGACCAGCGTTTGCCACAATGTCTGTACTGATATCTGAACAGCACCTAGCATGTACAGTTGCCACTACAATGGATTTATTGCACAACCTGTCACAGTGTCTGTGTTCCCTTCCTGTTGATATTTTTGCTGTCTTGATTATGTGCAGCAGTGCTCTTAAGTTGAGGATATCTATGATTTGGGATTTACAGGATTTGTCTAGAACAGGGAAATGAAAAGACCTCAAACAGTAAGCAGCAGATTATCCAGGTGAGCTGTGGGTATCTCACAGCAAGACTGTGCTGGTTTTCTTTTCTGAATGGCAGTGTTAATAAAGGCCATTTATGTGTTTACTGTACACAGACTCTGTGTATTTTACTCTCAGGGCAAAAAACATGTAGTTACAACACACAAAAAGCTGATAAACTGTGGAAACCTAAGCTAAATCACTCAATTTCAatcttttgtattgttttaaatcaaGTTAAAAGAAGTAGtagttgatttattgatttattcatgTTGGGCACATGCATGTCAATTTCAGGCCATAAAACCTccccacacacatttttttgttttccctgCTTGGACTTATGCCAGagcatatttattttgtaattgtaatatatGCTTTTGCTATAAACACATTTGAATGCCTGCAA

Function

GO:

id name namespace
GO:0032435 negative regulation of proteasomal ubiquitin-dependent protein catabolic process biological_process
GO:0031397 negative regulation of protein ubiquitination biological_process
GO:0016605 PML body cellular_component
GO:0005730 nucleolus cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU215234 lncRNA upstream 221327 16290776 ~ 16291007 (+) True G158776
TU215066 lncRNA upstream 532965 15979026 ~ 15979369 (+) True G158652
TU215060 lncRNA upstream 533388 15976852 ~ 15978946 (+) True G158651
TU215247 lncRNA downstream 12283 16542878 ~ 16561010 (+) False siah1
TU215250 lncRNA downstream 44089 16574684 ~ 16575374 (+) True G158786
TU215262 lncRNA downstream 57332 16587927 ~ 16588472 (+) True G158793
TU215287 lncRNA downstream 123541 16654136 ~ 16725205 (+) False st3gal2
TU215301 lncRNA downstream 197861 16728456 ~ 16730115 (+) True G158823
XM_015604415.2 mRNA upstream 1025 16506896 ~ 16511309 (+) True LOC107197482
XM_007249185.3 mRNA upstream 227290 16274679 ~ 16285044 (+) True cbln1
XM_022679976.1 mRNA upstream 275371 16236180 ~ 16236963 (+) True LOC111194834
XM_007249189.3 mRNA upstream 544244 15960149 ~ 15968090 (+) True LOC103038143
XM_007249183.2 mRNA downstream 12299 16542894 ~ 16571458 (+) False siah1
XM_007249181.3 mRNA downstream 27447 16558042 ~ 16571458 (+) True siah1
XM_007249182.3 mRNA downstream 27447 16558042 ~ 16571458 (+) False siah1
XM_007249175.3 mRNA downstream 167005 16697600 ~ 16725209 (+) True st3gal2
XM_007249169.3 mRNA downstream 233437 16764032 ~ 16773000 (+) True pllp
TU215237 other upstream 132511 16379259 ~ 16379823 (+) True G158779
TU214761 other upstream 1376136 15128368 ~ 15136198 (+) False LOC111194769
TU214762 other upstream 1376136 15128368 ~ 15136198 (+) False LOC111194769
TU214760 other upstream 1376136 15133947 ~ 15136198 (+) False LOC111194769
TU214707 other upstream 1461616 15050222 ~ 15050718 (+) True G158369
trnal-cag_11 other downstream 232931 16763526 ~ 16763608 (+) True trnal-cag_11
XR_002651250.1 other downstream 647080 17177675 ~ 17189251 (+) False zwilch
XR_002651251.1 other downstream 647080 17177675 ~ 17189251 (+) True zwilch
TU215929 other downstream 1995791 18526386 ~ 18576437 (+) True necab2
TU215930 other downstream 1995791 18526386 ~ 18576437 (+) False necab2

Expression Profile