RNA id: XM_007249189.3


Basic Information

Item Value
RNA id XM_007249189.3
length 2618
RNA type mRNA
GC content 0.47
exon number 10
gene id LOC103038143
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 15960149 ~ 15968090 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttaataGTTAATGGGGGTGTTAAGTTTGTTAGAATTTGGACATGAGTCAGTAGAGTAAATTAAACATTCAAACACGTAGGGGACCTTTAGGGTAAATACAACTtcgaaaaaatctgaaatatgaAGTGTTTGTTGGGTGACAGGAGTGAAGATGCGGCAGGTGGCGCTATTCGCTCCTAAGATATTTCTGAGGAGGGAGAACCATCCGCTGGGTAGCTAAAGATTAGTGAACAAGGTGAGGAACCTGCAGATATACGGTGAATTTAATTACGCTGTAATTAAACGTTGAATTCAGGAGCAATAGGCATCGGCTTTTTTTTGGAATACAGCGCTGCCCGGGTGTCTCCATGTCGTCGTGGGCGCAGGGCTCTGGAGGCAGGCGGCCTCAGACCAGCCCGAGCGGCGGTGGATTGCAACCGCTTCGATCTTACCGAAGACAGCCGTACCCTACCAGAGAGGAAAGACTAGATGCACACCATGAATCAGTTAGCTATGAAAATGTGGAACAGCAGGATGATTATTCTGGAACTGCAAACTACGAAACATATGAACATTCAGCACATCAGCCACACCAGACTCATAAGCCCAAAGTTCCCTCATCATCTGGAGATGGTGAGCACACTGCTCTGTACCAGAGACTATATGATCAGTTTCATGGAGATGGGGCCAAGAAGCCTGCTGACTGTGTTGTTCTTTCTGTGAAGACCCAGAATATGGATTACCCAAAATCGTTAGGACACTGTTTGCAGGAGCGTGGCCTCTCGGTGGAAATGCTTTACCTGCAGACGGAGTCAGGCCTAACCCGAGCCCTCCAAGATGTCCGTTCCGACGGTTCCCCCTTATGTATTCTCGTCGAGCAGACTAATGTAACTCTGTCCTCGTGCACTGTAATCATATTTTCAGAGTCCCTCAAAATTCACCGCAACATGCCCAAGGACCAAGCCCTGGAGTTTGTAATGGTGGAGTTTCGACGTCTTGGTGGTGGCCGACGACAGCACGAGTCCGCTGATGCCGCAGCACGAACAACTGAGCTGACTGATGACTACCTGGAGCGGGCCAAGCTGGAGCACCACTTCATGCCTTCCACCACACGCCATCTGCTCTTTCTCATGGCAGAGGGCCTGCACCTCTATTCGGAGGAGCTGGCAACCATCGCAGAGTATGTACAAAACCACCAGAAACGTCTGCAAGCATTAGCCAATGaatcagaaaataaagtcaCACCAGAGACGCTGACCAGTCTTCCTGCTGGTTTGGGGAATCCTCCACCCCTGCTACCAACTCCTATCAGCCAGAGCCAACCACAAAGCGAGCACTCAGCCATGCCCTCAGGAATGGGAGAGCCAGCTCATGACTCATATCTGAAGACCAAGCCTCCTCCTCTACTGTCAATGGATGTTCTTCAGGGATCTCCGCACAGGCCATCTGCTTCTCATGGCCATGGTACGCCTCATAGCTCTGGCACCACACATGGCCCTCCATCTTCTTTTACTCCACAGCTATCAAGAGGTCCACTAGGTCCTAGAGGTCCTCCACTTCCACGAGGACCACCAGGCCTCCGTAGTCTACTAGGTCAGAGAGAATCTCCAGCTCCTCATGGTCCACACCCCCACCAAGGCCTGCCAGGGCCTCATGGTCCGCCTGCTACACATGGGTCTTCTGACCATGAACCACATGATTTCCATTCACCTCGGGGTCCCTTACTTGGTCATGGACCCCCTCCATCACATGGACCTCCACTACTCCGTGGGCCACCATCCCAGAACGGCCCCAGTGGTCCTCGTGGACCACCTCCTCAACGTGGTCCCAGAGCACCACCACCTGCACTCAGGAGCCTTCACATGGGGAATCAAACAGgacCAGCACCACGCCCTTTGCGACGCCTGCTTCCCTGACCCACTTAGGACTGAAATGGCTTCAGCTAGTGCAGAAACTTAGGAAGACCTTGTGTTCTTGATGTTACTTGACAgtgtttcttttgtattttatgtttttggtttCAGATTTGTAAATtgcattttatactttttttctttcagtctcCTTTTTGTGTCCCTTGAAAGAACTGATGCCAcgttttattaaacgtgagttgttttgtttcagatctttgtgtttttgttaatttCCGAACTGTACGTTTCATTCACAACTAAGACTTTAGTTAGTGTAGGTAAAGCCTGTTTCATTATCCAATCAAAGAGATTTATGCTGATAAGGCCACTGTGTGGGCAGAGAACTGACACACACTGCTAGTCTTTTAGTTGTTTCCTTCACTGTTTGGGGAGAACATTTAATAggcttaaaaaaagaagatcGGAAACTAGAGAATTTCCTAAGGGAAACACATAACGGTTGTAcctatagactgtatataatgaAGCCAGAATATGGCAGAAATGGGagaatttcattttttattaacaatccataactgcatttttgtttaaatattcaaaatgaATGTTCATCAAAGAAAGATGGGAAGGGATctaagtatttttctttttatagtgCATATTATAAAACTATTACCTTTTCCCCCCCTAAAAGCTATTTGTTTGGCATTTCTGTTCCCATCACCCAATCCATTAAAGACCtccagtaatattgtataa

Function

GO: NA

KEGG:

id description
ko03013 Nucleocytoplasmic transport

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU215049 lncRNA upstream 17887 15936078 ~ 15942262 (+) True G158644
TU215046 lncRNA upstream 50858 15909003 ~ 15909291 (+) True G158641
TU215045 lncRNA upstream 52249 15907153 ~ 15907900 (+) True G158640
TU215029 lncRNA upstream 152616 15807319 ~ 15807533 (+) True G158627
TU215023 lncRNA upstream 183991 15775424 ~ 15776158 (+) True LOC103041352
XR_002651245.1 lncRNA downstream 1196 15969286 ~ 15986748 (+) False LOC111194770
XR_002651246.1 lncRNA downstream 1196 15969286 ~ 15986748 (+) False LOC111194770
XR_002651248.1 lncRNA downstream 1196 15969286 ~ 15986748 (+) False LOC111194770
XR_002651247.1 lncRNA downstream 1308 15969398 ~ 15986748 (+) False LOC111194770
XR_002651244.1 lncRNA downstream 1404 15969494 ~ 15986748 (+) True LOC111194770
XM_007249192.3 mRNA upstream 743 15947586 ~ 15959406 (+) True rspry1
XM_007249195.3 mRNA upstream 27683 15878898 ~ 15932466 (+) True cpne2
XM_022679657.1 mRNA upstream 84914 15851856 ~ 15875235 (+) True nlrc5
XM_022679658.1 mRNA upstream 84914 15851856 ~ 15875235 (+) False nlrc5
XM_007249197.3 mRNA upstream 113459 15833153 ~ 15846690 (+) True cetp
XM_022679976.1 mRNA downstream 268090 16236180 ~ 16236963 (+) True LOC111194834
XM_007249185.3 mRNA downstream 306589 16274679 ~ 16285044 (+) True cbln1
XM_015604415.2 mRNA downstream 538806 16506896 ~ 16511309 (+) True LOC107197482
XM_007249184.3 mRNA downstream 544244 16512334 ~ 16530595 (+) True n4bp1
XM_007249183.2 mRNA downstream 574804 16542894 ~ 16571458 (+) False siah1
TU214761 other upstream 823951 15128368 ~ 15136198 (+) False LOC111194769
TU214762 other upstream 823951 15128368 ~ 15136198 (+) False LOC111194769
TU214760 other upstream 823951 15133947 ~ 15136198 (+) False LOC111194769
TU214707 other upstream 909431 15050222 ~ 15050718 (+) True G158369
TU214177 other upstream 2224047 13733945 ~ 13736102 (+) True LOC107197649
TU215237 other downstream 411169 16379259 ~ 16379823 (+) True G158779
trnal-cag_11 other downstream 795436 16763526 ~ 16763608 (+) True trnal-cag_11
XR_002651250.1 other downstream 1209585 17177675 ~ 17189251 (+) False zwilch
XR_002651251.1 other downstream 1209585 17177675 ~ 17189251 (+) True zwilch
TU215929 other downstream 2558296 18526386 ~ 18576437 (+) True necab2

Expression Profile