RNA id: XM_007249192.3


Basic Information

Item Value
RNA id XM_007249192.3
length 2905
RNA type mRNA
GC content 0.51
exon number 15
gene id rspry1
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 15947586 ~ 15959406 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gaggaggaggaggaggaggtcgCTATAGAAATATGTGATGAGCTCACAGTGCTGAGTGCTCTGACTGATCCTCTGTAACGGGCTCTTCACCAGTTTATGACAGAAACATCTCATGGCTCGGCGGGCAGAACTTGGTGGATAGCCAAATCCGCGCTGTTATTCCTGAGCTTCAGTGGTTTTCCGCCGAGGGGACACGTTAAATTGTGTACCGGTGCCTCAGCAAATGTGGGCTACAGACTGGCTGCGTGTTCCTGTCTGTGGGCTTAGTCGCGTAGTGGAGTGTTAGCAGTTAGCTTCAGTTATACACTTCCTGTAGCGCTTTCGGGCTGGGCCTTGATACCGAGGAGGTGCCGCTGCTCTCCGATTAAGAAAAAACAGCGCGTCTGCTCATGTTAACGAGTGAAGAGTGAAGTGCTTCCTGGTGTAGGATGCTTGTTGACTGCAGCTCGAACGCTGTCGCTTCTTTCTGCTTGGCTGCTGACAGTCTGCAGTAGCACAATGATTGACATCTTTTTGCTGCCTGTCCTGAGGTGCCTCCCCAAGTCCTTCAAATGATATGATAGTAGCCACCTGGATTGCATTCTGTGCCAGCAGGAGCCTTGCGCGGGTTCTACGATTGACCGTAGAACAGCTGCGAACTGTAGAGTTCTGGCCAAGCTTTGCAGGCAGTGGAGCCATGGGGAACAGCTGTGTGTGCAGAGAAGACAGCGACGTGGAGGAGGGAGCAGCGCCTCGCAGGCAGCTGAGGCGAGTGGACAACTCGGCTGCTGATCCCCCGGAGGCCAGGAGCAGCCGGCCCAGGGACCCCGTCCGACCACCCAGACGAGGCCGGGGGCCTCATGAGCCACGACGGAAAAAGCAGAATGTGGATGGCCTGGTGCTGGATACACTGGCTGTCATCAGAACTCTTGTTGACAATGACCAAGAGCCACCTTACTCTATGATAACGTTGCATGAGATGGCTGAAACCGATGATGGATGGCTAGAAGTGGTGCAGTCTCTGATCCGAGTGATTCCTCTGGATGACCCACTCGGTCCGGCTGTGATCACCCTGCTGCTGGATGAATGCCCTCTGCCCACCAAAGATGCTTTGCAAAAGTTGTCAGACATGTTAAGTCTGAGTGGAGCCGTGGCTCGTCAGGACGCCCTTATCCCCGCCAAGCACCGCAACACCACTGCAGTACTAGGCTGCCTTGCTGAGAAACTTGCTGGCCCAGCTAGCATTGCACTCCTCAGCCCAGGAACCTTGGAGTATTTACTGGAGAGCCTgAGTTCAGAGGCCCATCCAACTGTAATGCTCTTTGCCCTCATTGCTCTGGAGAAGTTCTCCCAGACCAGTGAAAACAAGCTGACTGTGTCCGAGTCATGTATTAGCGATCGACTTGCTGTCTTGGAGTCCTGGGCAGATCACTCGGACTATCTTAAACGCCAGGTTGGCTTCTGTGCACAGTGGAGTCTTGACAACCTCTTTCTAAAAGATGGTCGCCAATTCACTTACGAGAAGGTCAATCTCAACAACATCAATGCCATGTTAAACAGCAATGATGTCAGTGAATATCTCAAGATATCTCCAAGTGGATTGGAGGCACGGTGTGATGCTTCGTCGTTTGAGAGTGTCCGCTGTACGTTCTGTGTGGACTCAGGGGTTTGGTACTATGAGGTCACAGTCATCACCTCTGGGGTCATGCAGATTGGCTGGGCCACAAAGGACAGCAAGTTCCTCAACCATgaGGGCTATGGGATTGGAGATGATGAGTACTCGTGTGCATACGATGGCTGCAGGCAGCTGATTTGGTACAATGCTCGCAGTAAACCTCACTCCCATCCCTGTTGGAAAGAAGGTGATGCCATAGGATTTTTGCTGGATCTCAGCAAGAAACAGATGGTTTTCTTCCTGAATGGACACCAACTTCCTCCTGAGAAGCAGGTGTTCTCCTCTGCCACgtCTGGCTTCTTTGCAGCAGCCAGTTTTATGTCCTACCAACAGTGTGAGTTTAACTTTGGGGCCAAGCCCTTCCGCCACCCCCCTTCTGTTAAGTTCAGCACCTTTAATGAGTTTGCCTCACTCGCATCCGATGAGAAGATCATCCTTCCCAGACATAGACGCCTAGCCCTTTTGAAGCAAGTTAGCATCAGAGATAACTGCTGCACCCTCTGCTGTGACAAGATGGCAGACACAGAGCTGAGACCCTGTGCACACAgTGGGATTTGTATGGAGTGTGCCTTACAGCTGGAAACGTGCCCCTTATGTCGACAGGACATTCAAACACGGGTCAGACTCATTTCCCATGTGTCCTGACACTAGCCCAGAAAGCCAGGGCATGGACACTCCCCCTAGCTTCCATCCCATCCAGTTCCCTCTGTCCAAGAGATCAACCTGACCAGTAGAACCATGATGCTGTTTCCAGTCTGGAAGCTACAGCTCAGAATGTTGTGAGGAAGGACATGGAACCTTTCCTTCTTCTAAAGACAGAGATTAGGTTTTTCGTCTTTTTAAGGAAGAAGCACATCTTCAAGATGGTCACACACCCCTATCAGAAAGGATGAGAGAGCTGAAGAAATCTGAGGAAGAAAAAAGGTTTCTGAGAAGTTCTAAGCACCATTTCCAGAAACCATACATGCCATACAAATGCCTGTCTAATAGTACATGCATTGCATATACAATCTGCCTAGGACTCTCTCTCTACAGGCTCTGATCAGCAGGGCCTGCATATCTCTGTGTTCAGATGTGTTAAATGTATCTGTGACTCTTCTCATGTTTTAGTCCAACTAAACCTTAAAGGCGCAACAAGAAAGACAGCAGTTCCCTAACCACTTTTATTTCCACGATGAatcattctctctcattctcattctcattctctctctctctctctctcttattctctctctctctcctctctct

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K23332 RSPRY1; RING finger and SPRY domain-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU215049 lncRNA upstream 5324 15936078 ~ 15942262 (+) True G158644
TU215046 lncRNA upstream 38295 15909003 ~ 15909291 (+) True G158641
TU215045 lncRNA upstream 39686 15907153 ~ 15907900 (+) True G158640
TU215029 lncRNA upstream 140053 15807319 ~ 15807533 (+) True G158627
TU215023 lncRNA upstream 171428 15775424 ~ 15776158 (+) True LOC103041352
XR_002651245.1 lncRNA downstream 9880 15969286 ~ 15986748 (+) False LOC111194770
XR_002651246.1 lncRNA downstream 9880 15969286 ~ 15986748 (+) False LOC111194770
XR_002651248.1 lncRNA downstream 9880 15969286 ~ 15986748 (+) False LOC111194770
XR_002651247.1 lncRNA downstream 9992 15969398 ~ 15986748 (+) False LOC111194770
XR_002651244.1 lncRNA downstream 10088 15969494 ~ 15986748 (+) True LOC111194770
XM_007249195.3 mRNA upstream 15120 15878898 ~ 15932466 (+) True cpne2
XM_022679657.1 mRNA upstream 72351 15851856 ~ 15875235 (+) True nlrc5
XM_022679658.1 mRNA upstream 72351 15851856 ~ 15875235 (+) False nlrc5
XM_007249197.3 mRNA upstream 100896 15833153 ~ 15846690 (+) True cetp
XM_007249196.3 mRNA upstream 114546 15823719 ~ 15833040 (+) True herpud1
XM_007249189.3 mRNA downstream 743 15960149 ~ 15968090 (+) True LOC103038143
XM_007249190.3 mRNA downstream 743 15960149 ~ 15968090 (+) False LOC103038143
XM_022679660.1 mRNA downstream 1192 15960598 ~ 15968090 (+) False LOC103038143
XM_022679976.1 mRNA downstream 276774 16236180 ~ 16236963 (+) True LOC111194834
XM_007249185.3 mRNA downstream 315273 16274679 ~ 16285044 (+) True cbln1
TU214761 other upstream 811388 15128368 ~ 15136198 (+) False LOC111194769
TU214762 other upstream 811388 15128368 ~ 15136198 (+) False LOC111194769
TU214760 other upstream 811388 15133947 ~ 15136198 (+) False LOC111194769
TU214707 other upstream 896868 15050222 ~ 15050718 (+) True G158369
TU214177 other upstream 2211484 13733945 ~ 13736102 (+) True LOC107197649
TU215237 other downstream 419853 16379259 ~ 16379823 (+) True G158779
trnal-cag_11 other downstream 804120 16763526 ~ 16763608 (+) True trnal-cag_11
XR_002651250.1 other downstream 1218269 17177675 ~ 17189251 (+) False zwilch
XR_002651251.1 other downstream 1218269 17177675 ~ 17189251 (+) True zwilch
TU215929 other downstream 2566980 18526386 ~ 18576437 (+) True necab2

Expression Profile