RNA id: XM_015605797.2


Basic Information

Item Value
RNA id XM_015605797.2
length 2524
RNA type mRNA
GC content 0.53
exon number 20
gene id nup93
representative False

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 15777725 ~ 15804576 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTATGTGTGGCAAGCTAGAGCGTGGGCCGGCACAGAGTGAGCGAGGTCAGAAAACGCCCTCGAATGGCGCTGGCCCACTTCCTGAGGCGAGTCAAGGCAAGGCAAGTCAGGAGGAGAGCCGCTGCAAGCGCCTCTCCTGGCTACCTGAGCCTAACTGCACTTCTGCGCTGACAGGTTGAGCCCTGGCATGAGGCTTTCTGAAGAACGAGAGAGACAATGCTCTGCTGTCCGCCATCGAGGAGTCTCGACGCAGGacATTCCTGCTGGCGGAAGAGTACCACCGCGAGTCTATGTTGGTGCAGTGGGAGCAGGTGAAGCAGAGAGTGCTACACACCCTGCTGGGAGCAGGAGAGGATGCATTGGACTTCAGCCAGGATGTAGAGccGAGTTTCGTAAGTGATGTCGGGGCTCCTGGACGCAGTGCTCTGGACAGTGTGGAGGTGGCCTATGGCAGACAGATCTACGTCTTCAATGAGAAAATAGTAAACGGACATGTTCAGCCCAGTCTTGGTGATTTGTGTGCGTCAGTGGCCGATAGTCTGGATGATAAGAATGTGTCCGACATGTGGCTGATGGTGAAGCAGATGACAGACGTGCTGCTGGTGCCagccaaagacacactgaaaagCCGCGTTGCTGTGGAGATGCAGATGGCTTTTGTCCGACAAGCCCTGACCTTCCTGGAAAACAGttaCAAGAACTACACCATGGTGACTGTGTTCGGGAACCTGCACCAGGCTCAGCTGGGTGGAGTGCCTGGCACTTATCAGCTGGTGAACAGCTTCCTCAACATCAAACTGCCCGGCCCGCTGCCAGGCATGCAGcagGATGGGGAGGTGGAGGGGCACCCAGTGTGGGCTCTGATCTATTACTGCCTGCGATGTGGAGACCTGTCTGCAGCCATGCAGGTGGTGAATCGGGCACAGCACCAGCTGGGAGACTTCAAGACCTGGTTCCAGGAGTACATGAACAGCCCTGACCGCCGTCTGGCTCCAGCTACAGAGAATAAGCTGCGACTGCATTACCGACGTGTACTACGCAACAGCGCTGATCCTTACAAGCGTGCCGTTTACTGCCTCATCGGCAAATGTGACATCGCAGACAACCACGGAGAAGTGGCAGATAAGACAGAGGACTACCTATGGCTGAAGCTGAACCAGGTGTGTTTCGATGATGACGGCAGCAGTGCTCCACAGGACAGGCTCACACTGGCTCAGCTACAGAAGCAGCTCCTGGAGGACTATGGCGAGTCTCATTTCTCGGCCAGCCAGCAGCCCTTCCTCTACTTCCAGGTGCTGTTCCTGACTGCACAGTTTGAAGCGGCTGTGGCATTCCTGTTCCGAGTAGAGCGCCTGCGCAGTCACGCTGTGCATGTGGCTCTCGTCCTCTATGAACTCAAACTGCTTCTCAAGTCGTCAGGACAGAGCGCACAGCTATTGAGTCAAGAACCAGGTGATCCTCCAATGGTGCGACGGCTAAACTTCATCCGTCTCCTCATGCTCTACACACGGAAATTTGAAGCCACAGATCCTCGAGAGGCCCTGCAGTACTTTTACTTCTTGCGGAACGAGAAAGATCACCAAGGAGAGAATATGTTCATGCGCTGCGTCAGTGAGCTGGTCATTGAGAGTCGTGAGTTTGACATGCTTCTGGGAAGACTGGAAAAAGATGGAAGCAGAAAGCCTGGCGTGATTGACAAGTTTGCCGGAGACACGCGGGCTATCATCACCAAAGTGGCCTCAGAGGCAGAGAACAAGGGCCTGTTTGAAGAAGCCGTCAAACTGTACGAGCTAGCCAAGAACCCTGATAAGGTGCTGGAGTTGATGAACAGGTTGCTGAGTCCAGTAATCGCCCAGGTCAGTGCACCACAGTCCAACAAAGAACGTCTCAAGAACATGGCGCTGGGCATCGCTGAACGGTTCCGTACTAATGGTGTGGCTGGAGAGAAGTCTGTGGACAGTACCTTCTACCTGCTGTTAGACCTCATGACCTTCTTTGATGAGTACCACGCTGGCCACATCGACCTTGCATATGATGTGATTGAGAGACTGAAGTTGGTTCCTTTGAGCCAAGACAGCGTAGAAGAGAGGGTGGCAGCATTCAGGAACTTCAGTGATGAGGTTAGACACAATTTATCAGAGGTGCTGCTTGCCACCATGAACATTTTGTTCACACAGTACAAGCGCCTAAAAGGAGCGACAGCCGGCACACCAGGCAGACCACAGCGCACACTAGAGGATCGGGACTCGCTACTGCGCAGCCAGGCCCGGGCACTGATCACCTTTGCTGGGATGATCCCATACCGCATGGCAGGAGACACCAACGCCAGACTGGTGCAGATGGAGGTCTTGATGAactgagcaagagagagaaagattgttCTTTCCCTCCTGCTTCTCCAACTGTTCCCATACCCCATCCACTTTTTGTTTCTCCATGCTTTGCAACCCCCTTGTGtgaatttatatttgtatttctttttcatcgttttgaaataaaaaaaatctcaaactTTTGTTCACCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU215023 lncRNA upstream 12679 15775424 ~ 15776158 (+) True LOC103041352
TU215026 lncRNA upstream 16397 15772226 ~ 15772440 (+) True G158624
TU215024 lncRNA upstream 16892 15771295 ~ 15771945 (+) True LOC107197617
TU215025 lncRNA upstream 20179 15768067 ~ 15768658 (+) False LOC103041858
TU214972 lncRNA upstream 203843 15583666 ~ 15584994 (+) False G158582
TU215029 lncRNA downstream 2743 15807319 ~ 15807533 (+) True G158627
TU215045 lncRNA downstream 102577 15907153 ~ 15907900 (+) True G158640
TU215046 lncRNA downstream 104427 15909003 ~ 15909291 (+) True G158641
TU215049 lncRNA downstream 131502 15936078 ~ 15942262 (+) True G158644
XR_002651245.1 lncRNA downstream 164710 15969286 ~ 15986748 (+) False LOC111194770
XM_007249200.3 mRNA upstream 12671 15775442 ~ 15776166 (+) False LOC103041352
XM_015605776.2 mRNA upstream 16892 15771335 ~ 15771945 (+) False LOC107197617
XM_007249202.3 mRNA upstream 20176 15768055 ~ 15768661 (+) True LOC103041858
XM_007249203.3 mRNA upstream 38375 15737988 ~ 15750462 (+) True c18h16orf70
XM_007249198.3 mRNA downstream 3613 15808189 ~ 15822339 (+) True slc12a3
XM_007249196.3 mRNA downstream 19143 15823719 ~ 15833040 (+) True herpud1
XM_007249197.3 mRNA downstream 28577 15833153 ~ 15846690 (+) True cetp
XM_022679657.1 mRNA downstream 47280 15851856 ~ 15875235 (+) True nlrc5
XM_022679658.1 mRNA downstream 47280 15851856 ~ 15875235 (+) False nlrc5
TU214761 other upstream 652639 15128368 ~ 15136198 (+) False LOC111194769
TU214762 other upstream 652639 15128368 ~ 15136198 (+) False LOC111194769
TU214760 other upstream 652639 15133947 ~ 15136198 (+) False LOC111194769
TU214707 other upstream 738119 15050222 ~ 15050718 (+) True G158369
TU214177 other upstream 2052735 13733945 ~ 13736102 (+) True LOC107197649
TU215237 other downstream 574683 16379259 ~ 16379823 (+) True G158779
trnal-cag_11 other downstream 958950 16763526 ~ 16763608 (+) True trnal-cag_11
XR_002651250.1 other downstream 1373099 17177675 ~ 17189251 (+) False zwilch
XR_002651251.1 other downstream 1373099 17177675 ~ 17189251 (+) True zwilch
TU215929 other downstream 2721810 18526386 ~ 18576437 (+) True necab2

Expression Profile