RNA id: XM_007249206.3


Basic Information

Item Value
RNA id XM_007249206.3
length 3871
RNA type mRNA
GC content 0.44
exon number 13
gene id kiaa0513
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 15691503 ~ 15717211 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTGCTGCTGGCTCTGTTCTTGCGAAATAGAAAGggaattttaattattaatggcAAAAGTGAGCACCTTGTGCTTATAAGCAATGTGAGTGTAGATTCAGAGCCCCAACCTAtcaaaacctttaaatgaacGTCAGAATTCAACATTAACAGATGtctattaaaatatgtaatgcaACCAGTAAATGCACGTTCTTTGCTTTCTGGGAGGACAAACACATaaaggatgatgatgatgatgaggatgggAATCACCGACCCCCCTCTCGTGTCGTCGTGTCCATCGACAAGTGCGCAGTGCTCGCGCACAACCCGGTCACGTGCTTCTTTCTGTCGACGTAACTGGATTCCCCCCTCCTCGTCCACTCGAGCTATCGCGCGTGCGCAGTTACCGCTGACTGGAGTGAGCGGAGTGAGAAGAGACGGGAGCGCGCGCGCACGGCGGGTTGAGAGAGAGCACGTAGTTCAGCCTGGAACTGTTCTGGTACAGCTGTAGGATAAAGAGACGTGGTACAGCAGCTTCTCCACTGTGGGTTGTTAGCTGAGGTGGGCCCACCTGCTTTCGTGTGACCTCAACAGTCCACCTGTATCTCCCTCTTGGATCAGTATGGAGGGGGCTGCAGTGGAAAACCTCATAGACTTTGACATTCCCTCCAGCACAGAAGGGACAGCACCCTCTGCTGTTGGTCTTCCTGGTGGAGCAGACTTGTTCTTTGGGGAGCCTCTTGTTCCAGAGCCGATTGCAGCCCCTATGAAGCTTCCTGAGCCTATTGCCCCAACACTGGCTGCTCACGAGTCAGAGGAGGGTGCAGACGACAGCGATGCCACAGAGTCTGCGGACAGTGAGAATGAAGCCATAGATTCTCCATCCCACCATTCACAGTCACGCCGGTCTTCTTCctcatccaatcacagtgcTGAGGACCCAGATGTGACAGAACGGCGAGAATTTATGAAGGCCTACGTAGAGAAGTTGTTTCATGGAAAggagGACTTTGACCAGGAGGAGAAGGCCCGTTTTGGCGAGCTGTGCAGTGGAGAGAATGGCAAAGGCAGAGAGTGGTTCGCCAAATACGTCAGTGTCCAGcgctGTAACTCCAAGTGTGTAAGTGAGCAGACGTTCTACAGGCTGGTCCAGTCCTTTGCAGTCGTTCTGTTTGAATGCTACCAGATGGATGATTATGTCCCTGCCAAGCATTTAATGACCATGTGCTTTACGTACTACTACTTTGGGAAGCTACATCTGTCACCCACAGAGCTCCTGGACAGGCCGAGTGCAGGCATTGACTCGTACCTGCGCAGTGGAAAGGTCTGGCTCTCGGGCAAGAAGGACATCGCTGAGAAGCTGCTAAAAAATACAACGGCTAAGACTGACATGAAGAGCTTTTTTGGGGGTCTAGAGAGCAAACTGAGAGGCCCCTCCACCCGCAAGAATGATGAGCCAGAGAGTCCAGCAGAAGGAAAAGCAAAAACACCAGCCTCTCCACCTGCATCACCAgagaagaaagagggagagaagattTACTTGTATACACACCTCAAGCAGCAGCCGATCTGGCACACATTGAGGTTTTGGAATGCTGCGTTCTTCGATGCTGTGCACTGCGAGAGGAACAAGAGATCCCCAACCACCAGGCGGACGGCTGAGGAGGAGAAAGATGAGAGGGAAAAGTGGTGTCACATGACTCAGGAAGAGAAAGACGACAGCTCCAGAATAGACGAAAACATCACCTTCGGACAGCTGGGgacCTTTACTCATAATATGCTGGCCTTTGGCTTGACTAAGAAGCTCTGCAACGACTTTCTCAAGAAGCAGGCCGTTATTGGACACTTGAATGAAGAGCAATACAAATTGCTGAGTGACCATATTGAACAGATGGCCGTGGAGTGAGCAGCAGATACAGAACACACCTGTTCTTCTATACTTGCACATTCAATCCAGCCTCCCTCATCAGTTCCTTATAAACACTCCTGCTCAGCTTCAGCTGGCAACTCCGTACAATATCATATCAGATCGTGCGACAACCGTCCTGCACACAGCTGAACAGCTGTAGGTGATAAAATATTCAGAAGGTGGCAATAACTTTTCATCATCATGCATCATCTTACTTCAGTGACACTCCAGTGAGTTGCTGCAGCTCTGTCACAGCAATTACGTGAATTCAAATATATCAGTATCTGATGGATCAGCCATATTCCTGATGGTTCTGTGTTGTgcaatatatgtacagtatatcataGATCCAATAACCTATGAATTGCTGGTTTAGCTAATATACAGAAAGTGTCCTTTACCCCAGTGAAGTTAAGCTGAAAAAATGACAAACCCTTTCAGATATGCTCTTCAGCCTCACTGTCCCTCTGGTTTCTCTCCAGAAGATCTTAGTCAGGTGCATGCAGTTCAGAAAGAGTTTTCCTCTTTATTCCATGTGTCCTATTTATTGCATGTGTTCAGCACCTATTTATAGAGCTGATCCTTTTAGTCCTTTTAATATTACACAATAGTAGCTCTACTGGTACTGCAAAacaataggcctgtcacaataactatgcTGTTTGGACAGTATATTGCTCTGGAAATTATTGTAATAAGTGagattgtaattgtaattgtttaGACCTTGATTACTAAGAACAATTTGACATTGATATTAACAAAGCACTTAAATGTTCCAAATATATGTtcatatgttaatttattataatctataatgtaactattgtgacaggcctactaaTGCAACATCATAAAGAATTCTACAGTATTGTGACAGACTGACCAACCAGCCACAGCCCTGTTCTACATTTCCAGGCTGTTTTTAGTCTTTTAGTCTCAATGAGTTGAAATGTGACCCTGTATCAATCATGTGTGAAACAGTATTAATATGATTTGTTTAATATGTGTCTCCTACACGTGGTGTGCGAGCCTCCAAAGAGAACATTGTAACTCCGGTCTGTTTAAAGTGCCTTTAATGACTTACCCTTTCCTCGTGCAGTGTTGCAGATGTAAGCCTTTTCCGTCCACATGAAACCCTCtcagtaaatgtatgtatggatCCTGTTTGCTGTAGTGGGGTGTAGTTATCTTTGCATTTGTGTGTATTGTACATGTTTGCTGTATGTCTGTTCTGTGTGTGGTTGTCGAGTATTTGTAATAGACTAGGTCAGGACTGTCTGTAGTGGTTATAGGATCAGCATGACCTTCTGGAGCTGCTGTTTGTGTTCCTCTCGGTGTGCATGATTGTAAATGGTTTCCTGTCAGCATGGTGAGTAGAACATTGTGAGTTGTAGTGTAGTTCCATTTGCAGCCAACTGAGGGTGATCATGTTGCTCCTCTTCCTTGGACTGCTGGGCTGTGGAGGAGAAGGTTAACTACAGAAGTGAGGTGTTTCTGGAAGGTTTTATGAATTTACTGAAGTCTCCTCTGTGTGAGGATAATGAAAAGTTAATATATTCAGTTTGTAAATACAGAGTTTTTATCAGTGTTGTGGTTCGTATTGCATATGATGCGTTTTTTGCAACACAGTTCAAGTAGCTGGTTCAAAAAAGGGATCACTGGATTGTTAACTGTTAACAGTTTATACAGTGTTTACGTGTtgtgtctcatgtctcatggtGTGCATGGACATAATAGGATGGGCTGCAACCATTTTAATAGTGAAACGTGCTTTTCAAATCATGGTGTAacttttaatgttatattatgtaatgtaatttaatgtgaaTGGATGTGATTTAGTGTCTTAAATACATTTCCCCTTAAGTGCCCTCCAATTCCCTACTGGAATGTACCACTCAGAGCCTGTTATCCCCATACCATTATGTGGAACATATGTTGTtattgtgtttataataaaatatgcctAAAATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU214970 lncRNA upstream 106509 15583441 ~ 15584994 (+) True G158582
TU214971 lncRNA upstream 106509 15583592 ~ 15584994 (+) False G158582
TU214972 lncRNA upstream 106509 15583666 ~ 15584994 (+) False G158582
TU214966 lncRNA upstream 119165 15571534 ~ 15572338 (+) True G158580
TU214962 lncRNA upstream 187459 15503526 ~ 15504044 (+) True G158576
TU215025 lncRNA downstream 50856 15768067 ~ 15768658 (+) False LOC103041858
TU215024 lncRNA downstream 54084 15771295 ~ 15771945 (+) True LOC107197617
TU215026 lncRNA downstream 55015 15772226 ~ 15772440 (+) True G158624
TU215023 lncRNA downstream 58213 15775424 ~ 15776158 (+) True LOC103041352
TU215029 lncRNA downstream 90108 15807319 ~ 15807533 (+) True G158627
XM_007249208.2 mRNA upstream 2789 15678723 ~ 15688714 (+) True LOC103043506
XM_022679655.1 mRNA upstream 190290 15482444 ~ 15501213 (+) True LOC103031192
XM_007249216.3 mRNA upstream 315339 15373349 ~ 15376164 (+) True chtf8
XM_007249220.3 mRNA upstream 344394 15342494 ~ 15347109 (+) True LOC103046975
XM_022679422.1 mRNA upstream 356501 15333873 ~ 15335002 (+) True LOC111194727
XM_007249203.3 mRNA downstream 20777 15737988 ~ 15750462 (+) True c18h16orf70
XM_007249204.3 mRNA downstream 20777 15737988 ~ 15750462 (+) False c18h16orf70
XM_007249202.3 mRNA downstream 50844 15768055 ~ 15768661 (+) True LOC103041858
XM_015605776.2 mRNA downstream 54124 15771335 ~ 15771945 (+) False LOC107197617
XM_007249200.3 mRNA downstream 58231 15775442 ~ 15776166 (+) False LOC103041352
TU214761 other upstream 555305 15128368 ~ 15136198 (+) False LOC111194769
TU214762 other upstream 555305 15128368 ~ 15136198 (+) False LOC111194769
TU214760 other upstream 555305 15133947 ~ 15136198 (+) False LOC111194769
TU214707 other upstream 640785 15050222 ~ 15050718 (+) True G158369
TU214177 other upstream 1955401 13733945 ~ 13736102 (+) True LOC107197649
TU215237 other downstream 662048 16379259 ~ 16379823 (+) True G158779
trnal-cag_11 other downstream 1046315 16763526 ~ 16763608 (+) True trnal-cag_11
XR_002651250.1 other downstream 1460464 17177675 ~ 17189251 (+) False zwilch
XR_002651251.1 other downstream 1460464 17177675 ~ 17189251 (+) True zwilch
TU215929 other downstream 2809175 18526386 ~ 18576437 (+) True necab2

Expression Profile